Trichodesmium erythraeum IMS101
Names | Trichodesmium erythraeum IMS101 |
---|---|
Accession numbers | NC_008312 |
Background | Trichodesmium erythraeum occurs throughout the open waters of oligotrophic tropical and subtropical oceans and forms filaments (trichomes) of 20 to 200 cells that can further aggregate into colonies several millimeters across. Trichodesmium can form blooms in excess of 100,000 km2, which are most commonly composed of Trichodesmium erythraeum and Trichodesmium thiebautii. A marine diazotroph, it fixes nitrogen in non-granulated cells. It is also able to induce genes under phosphate stress that would allow it utilize organic phosphonate, an ability so far unknown in marine cyanobacteria. The colonies vary in color from yellowish-brown to deep red because they contain phycoerythrin as their primary light harvesting pigment. Trichodesmium spp. are planktonic and owe their buoyancy to the possession of gas vacuoles. Trichodesmium erythraeum (strain IMS101) produces a small intracellular cyclic peptide dubbed trichamide, which in its pure form is not neurotoxic in mice, however a crude preparation of the peptide is neurotoxic. (HAMAP: TRIEI) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Cyanobacteria |
Class: | NA |
Order: | Oscillatoriales |
Family: | NA |
Genus: | Trichodesmium |
Species: | erythraeum |
Strain | IMS101 |
Complete | Yes |
Sequencing centre | (21-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA (30-AUG-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | coastal waters, North Carolina USA |
Isolation country | USA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Filamentous |
Mobility | Yes |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Filaments |
Sporulation | NA |
Metabolism | Nitrogen fixation |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Ubiquinone and other terpenoid-quinone biosynthesis
Photosynthesis
Photosynthesis - antenna proteins
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Ubiquinone and other terpenoid-quinone biosynthesis
Photosynthesis
Photosynthesis - antenna proteins
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis