Cytophaga hutchinsonii ATCC 33406
Names | Cytophaga hutchinsonii ATCC 33406 |
---|---|
Accession numbers | NC_008255 |
Background | Cellulose a common component of plant cell walls is insoluble and relatively resistant to degradation. Cytophaga hutchinsonii, an aerobic Gram-negative bacterium that is commonly found in soil, rapidly digests crystalline cellulose. Like many of the bacteria in the group of Cytophaga-Flavobacterium, C. hutchinsonii exhibits the ability to move rapidly over surfaces by a process known as gliding motility. The mechanism of gliding motility is not known, but flagella are not involved. Gliding motility is thought to be important in allowing C. hutchinsonii to colonize its insoluble growth substrate. Analysis of the C. hutchinsonii genome sequence will facilitate studies of cellulose degradation, which will be important in developing new strategies to utilize this renewable resource. It will also help to determine the mechanism of bacterial gliding motility, which has remained an unsolved biological mystery for over 100 years. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Bacteroidetes |
Class: | Cytophagia |
Order: | Cytophagales |
Family: | Cytophagaceae |
Genus: | Cytophaga |
Species: | hutchinsonii |
Strain | ATCC 33406 |
Complete | Yes |
Sequencing centre | (02-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA (24-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | seawater |
Isolation country | Korea |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | 30.0 |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Singles |
Sporulation | NA |
Metabolism | Cellulose degrader Chitin degradation |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid biosynthesis
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of unsaturated fatty acids
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid biosynthesis
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of unsaturated fatty acids