Chromohalobacter salexigens DSM 3043

Names | Chromohalobacter salexigens DSM 3043 |
---|---|
Accession numbers | NC_007963 |
Background | Chromohalobacter salexigens DSM 3043 is a metabolically versatile, moderately halophilic and halotolerant bacterium, isolated from a solar saltern on Bonaire, Netherlands Antilles. It is a gamma-Proteobacterium, and as such, closely related to Pseudomonas and Eschrichia coli . It has resistance functions to heavy metals and can degrade aromatic hydrocarbons. It is an aerobic chemoorganotroph that grows on a wide range of simple carbon compounds at NaCl concentrations between 0.5 M and 4 M, with an optimum at 2-2.5 M. Some groups of bacteria balance the high osmolality of their environment with high intracellular concentrations of KCl. Instead C. salexigens uses organic solutes to provide the necessary osmotic balance. These organic "compatible" solutes, such as glycine betaine, ectoine, simple sugars, and many others are much less disruptive to normal functioning of enzymes than high concentrations of KCl, and accordingly less farreaching adaptations are required in the protein structure. Osmoadaptation is achieved by de novo synthesis of ectoine (ectABC) and hydroxyectoine, and by the uptake of osmoprotectants such as choline, choline-O-sulfate and glycine betaine. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Oceanospirillales |
Family: | Halomonadaceae |
Genus: | Chromohalobacter |
Species: | salexigens |
Strain | DSM3043 |
Complete | Yes |
Sequencing centre | (15-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA (17-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | solar salt facility cont. more than 10% NaCl |
Isolation country | Netherlands |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | 37.0 |
Temperature range | Mesophilic |
Habitat | Fresh water, Solar saltern |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Pairs, Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganotroph |
Diseases | None |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis