Magnetospirillum magneticum AMB-1

Names | Magnetospirillum magneticum AMB-1 |
---|---|
Accession numbers | NC_007626 |
Background | Magnetospirillum magneticum AMB-1 is a Gram-negative, magnetotactic, facultative anaerobic bacterium. Respiratory nitrate reduction allows the oxidation of a substrate under anaerobic conditions. The terminal electron acceptor may be Fe(III) via membrane-bound ferric reductase. Like other magnetotactic bacteria, Magnetospirillum magneticum AMB-1 was found to form internal crystals of magnetite (Fe3O4) that are surrounded by a membrane (magnetosome). The uniform size and distribution of the crystals indicates extreme biological control of the mineralization process. The bacterium uses the iron mineral as a magnet to orient itself and exhibits magnetotaxis to follow magnetic field lines downward towards regions of favourable growth. Usually found near the oxic-anoxic transition zone, which is usually located at the sediment-water interface in freshwater environments or displaced upward into the water column in marine semi-anaerobic environments. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Alphaproteobacteria |
Order: | Rhodospirillales |
Family: | Rhodospirillaceae |
Genus: | Magnetospirillum |
Species: | magneticum |
Strain | NA |
Complete | Yes |
Sequencing centre | (06-SEP-2004) Tadashi Matsunaga, Tokyo University of Agriculture and Technology, Department of Biotechnology (07-DEC-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA Naka-cho |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | Pond water in Tokyo Japan |
Isolation country | Japan |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Spirilla |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Microaerophilic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | NA |
Energy source | Heterotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Benzoate degradation
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Benzoate degradation
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Nitrotoluene degradation
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis