Sulfurimonas denitrificans DSM 1251
Names | Sulfurimonas denitrificans DSM 1251 |
---|---|
Accession numbers | NC_007575 |
Background | Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) is a sulfur-oxidizing, chemolithoautotroph Epsilonproteobacterium. Its genome was sequenced in order to have a representative of the sulfur-oxidizing Epsilonproteobacteria present in the coastal marine sediments in addition to the genomes of the deep-sea hydrothermal vents sulfur-oxidizing Epsilonproteobacteria Nitratiruptor sp. (strain SB155-2) and Sulfurovum sp. (strain NBC37-1). Based on its phenotype, S. denitrificans was originally named Thiomicrospora denitrificans. When the polyphyletic nature of Thiomicrospora was revealed, with members from both the Gammaproteobacteria and Epsilonproteobacteria, Thiomicrospora denitrificans was removed from the genus Thiomicrospora and placed within the genus Sulfurimonas. Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) has one of the largest genomes among the Epsilonproteobacteria sequenced to date, which likely provides the metabolic versatility necessary for survival in a habitat more complex than found in a metazoan host. Close relatives of S. denitrificans are motile while strain ATCC 33889 / DSM 1251 is nonmotile probably because of the interruption of a flagellar biosynthesis operon by a transposon. This nonmotility seems to have been acquired recently. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Epsilonproteobacteria |
Order: | Campylobacterales |
Family: | Helicobacteraceae |
Genus: | Sulfurimonas |
Species: | denitrificans |
Strain | DSM 1251 |
Complete | Yes |
Sequencing centre | (03-NOV-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (11-OCT-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | Estuarine mud in Netherlands |
Isolation country | Netherlands |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Spirilla |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | 20.0 |
Temperature range | Mesophilic |
Habitat | Marine, Mud |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | Carbon dioxide fixation Desulfurylates coal Nitrate reducer Sulfur oxidizer |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Citrate cycle (TCA cycle)
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis