Thiomicrospira crunogena XCL-2
Names | Thiomicrospira crunogena XCL-2 |
---|---|
Accession numbers | NC_007520 |
Background | The bacteria of the oxidative part of the sulfur cycle are of global importance and catalyze complex pathways for the complete oxidation of sulfide to sulfate. One of the important groups catalyzing the oxidation of reduced sulfur compounds in the marine environment are bacteria belonging to the genus Thiomicrospira, a group which originally included all marine, spiral-shaped sulfur oxidizing bacteria. Subsequent analyses of 16S rDNA sequences have revealed that members of Thiomicrospira are distributed among the gamma and epsilon subdivisions of the Proteobacteria. All Thiomicrospira species characterized to date are obligate chemolithoautotrophic bacteria that use sulfide, thiosulfate, and elemental sulfur as electron donors, and CO2 as their carbon source. Thiomicrospira crunogena was originally isolated from the East Pacific Rise. It was subsequently cultivated or detected with molecular methods from deep-sea vents in both the Pacific and Atlantic. (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Thiotrichales |
Family: | Piscirickettsiaceae |
Genus: | Thiomicrospira |
Species: | crunogena |
Strain | XCL-2 |
Complete | Yes |
Sequencing centre | (01-NOV-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (27-JUL-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | Deep-sea hydrothermal vent |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Spirilla |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Microaerophilic |
Optimal temperature | 28.0 |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | Carbon dioxide fixation Desulfurylates coal Sulfur oxidizer |
Energy source | Chemoautotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Glutathione metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation in photosynthetic organisms
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Aminoacyl-tRNA biosynthesis