Pseudomonas syringae pv. phaseolicola 1448A
Names | Pseudomonas syringae pv. phaseolicola 1448A |
---|---|
Accession numbers | NC_005773, NC_007274, NC_007275 |
Background | This plant pathogen causes disease in a wide range of plants and crops, including bacterial speck on tomatoes. Black specks form on the leaves and fruit, stunting growth. This gram negative pathogen also causes halo blight of beans. It is primarily seed-borne, and can also be spread from plant to plant by rain. Pseudomonas syringae is a model organism in plant pathology.This is a very versatile organism with several important phenotypes that have made it a focus of study and commercial application and a relevant organism for the DOE in the USA to support resarch, as this plant pathogen causes disease in a variety of plant species, severely impacting both food and biomass production.Also strains of P. syringae have been exploited for a variety of industrial purposes of significance to DOE. For example, many strains of this species are active as ice nuclei catalyzing ice formation at temperatures approaching 0 C. For this reason they have been exploited as artificial ice nucleating agents in processes such as those involved in artificial snow production. A major use of the freeze-dried cells of P. syringae used in such an application has been in the creation of artificial ice islands to facilitate offshore oil drilling in cold oceans such as in the arctic. In a similar application there has been interest in using such ice nucleation active bacteria for the production of artificial mountains of ice in the winter for use in summer cooling of large industrial and office buildings. There is also considerable activity in the study of the use of such bacterial ice nuclei in improving the process of freezing of various foods, including frozen emulsified foods such as ice cream to improve both the energy efficiency of the process and quality of the product.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Pseudomonadales |
Family: | Pseudomonadaceae |
Genus: | Pseudomonas |
Species: | savastanoi |
Strain | 1448A |
Complete | Yes |
Sequencing centre | (04-MAR-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (31-MAR-2005) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger |
Isolation site | tomato, Channel Islands, Guernsey, UK |
Isolation country | United Kingdom |
Number of replicons | 3 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Singles |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Heterotroph |
Diseases | Plant rot |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fructose and mannose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Lysine degradation
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Styrene degradation
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fructose and mannose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Lysine degradation
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Styrene degradation
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis