Porphyromonas gingivalis TDC60
Names | Porphyromonas gingivalis TDC60 |
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Accession numbers | NC_015571 |
Background | Porphyromonas gingivalis is a Gram-negative anaerobe. It is a secondary colonizer of the oral cavity and has a role in the initiation and progression of periodontal disease, which is the major cause of tooth loss in industrial nations. It is a chronic inflammatory disease of the periodontium that leads to erosion of the attachment apparatus and supporting bone for teeth and is one of the most frequently occurring infectious diseases in humans. Recently, a number of epidemiological studies have shown significant relationships between periodontal diseases and cardiovascular diseases. P.gingivalis, which is often found in deep periodontal pockets of humans, is asaccharolytic and highly proteolytic and produces a broad array of potential virulence factors involved in tissue colonization and destruction as well as host defense perturbation. P. gingivalis strains are divided into virulent and less-virulent strans; ATCC 33277, the type strain, is a less-virulent strain unlike W83, the only other currently sequenced member of the species (PORGI). It produces only a localized abscess 3 days after subcutaneous inoculation (adapted from PubMed 18524787). (HAMAP: PORG3) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Bacteroidetes |
Class: | Bacteroidia |
Order: | Bacteroidales |
Family: | Porphyromonadaceae |
Genus: | Porphyromonas |
Species: | gingivalis |
Strain | TDC60 |
Complete | Yes |
Sequencing centre | (19-MAY-2011) Contact:Ichiro Nakagawa Tokyo Medical and Dental University (24-MAY-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA Yushima 1-5-45, Bunkyo-ku, Tokyo 113-8510, Japan |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454, Sanger |
Isolation site | severe periodontal lesion at Tokyo Dental College in Japan |
Isolation country | Japan |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | NA |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | Free living |
Host name | Homo sapiens |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | Yes |
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis