Desulfobacca acetoxidans DSM 11109

Names | Desulfobacca acetoxidans DSM 11109 |
---|---|
Accession numbers | NC_015388 |
Background | Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) is an anaerobic, mesophilic, sulfate reducer, Gram-negative bacterium isolated from granular sludge of a laboratory-scale upflow anaerobic sludge bed reactor fed with acetate (as sole carbon and energy source) and sulfate. The bacterium is oval-shaped, 1.3 x 1.9-2.2 microns.The optimum growth with acetate occurs around 37 degrees Celsius in freshwater medium. Enzyme studies indicates that acetate is oxidized via the carbon monoxide dehydrogenase pathway. Growth is not supported by other organic acids, such as propionate, butyrate or lactate, alcohols such as ethanol or propanol, and hydrogen or formate. Sulfite and thiosulfate are also used as electron acceptors, but sulfur and nitrate are not reduced. Sulfate-reducing bacteria play an important role in the degradation of organic matter in anaerobic bioreactors treating sulfate-rich wastewaters, such as those from paper mills, tanneries or food oil industry. (Adapted from PMID: 10319454). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Deltaproteobacteria |
Order: | Syntrophobacterales |
Family: | Syntrophaceae |
Genus: | Desulfobacca |
Species: | acetoxidans |
Strain | DSM 11109 |
Complete | Yes |
Sequencing centre | (12-APR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (30-MAR-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Illumina GAii, 454-GS-FLX-Titanium |
Isolation site | Anaerobic granular sludge of a pilot-scale UASB reactor (1.7 1) fed with acetate and an excess of sulfate. |
Isolation country | Netherlands |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | NA |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Fresh water, Sludge |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | Pairs |
Sporulation | Nonsporulating |
Metabolism | Sulfate reducer |
Energy source | Organoheterotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis