Planctomyces brasiliensis DSM 5305
Names | Planctomyces brasiliensis DSM 5305 |
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Accession numbers | NC_015174 |
Background | Planctomyces brasiliensis is a member of the order Planctomycetales, a group of budding mostly aquatic microorganisms lacking peptidoglycan and representing a phylogenetically distinct lineage within the domain Bacteria. The planctomycetes share a number of morphological features, having spherical or ovoid cells which bear crateriform structures and, in some cases, nonprosthecate appendages. Planctomyces have a distinct cell cycle, with sessile mother cells forming stalks that attach to surfaces or to other stalks and motile daughter cells that bud from the mother cell. Mother cells are spherical to ovoid with stalks composed of twisted fibrils. The diameter of the mother cell is 1.1 to 1.5 um. Multiplication occurs by budding on the distal cell pole, yielding daughter cells which are mono-trichously and polarly flagellated. Cells have rigid stalk fibers and can form multicellular rosettes. Although it lacks peptidoglycan it has a cell envelope which consists almost entirely of protein which is rich in proline and cysteine and is stabilized to a high degree by disulfide bonds. P.brasiliensis was first isolated in 1982 in water from a salt pit, Lagoa Vermelha, Brazil (adapted from PMID 17978240 and DOI=10.4056/sigs.1052813). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Planctomycetes |
Class: | Planctomycetacia |
Order: | Planctomycetales |
Family: | Planctomycetaceae |
Genus: | Planctomyces |
Species: | brasiliensis |
Strain | DSM 5305 |
Complete | Yes |
Sequencing centre | (01-MAR-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (22-FEB-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Illumina GAii, 454-GS-FLX-Titanium |
Isolation site | Water from salt pit, Lagoa Vermelha, Brazil |
Isolation country | Brazil |
Number of replicons | 1 |
Gram staining properties | NA |
Shape | Cocci |
Mobility | Yes |
Flagellar presence | NA |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Fresh water, Marine |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Caprolactam degradation
Aminoacyl-tRNA biosynthesis