Desulfovibrio aespoeensis Aspo-2
Names | Desulfovibrio aespoeensis Aspo-2 |
---|---|
Accession numbers | NC_014844 |
Background | Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) is a halotolerant, sulfate-reducing Gram-negative bacterium isolated from granitic groundwater sampled at a depth of 600 m at Aspo hard rock laboratory, Sweden. The cells are vibrioid (0.5 pm in diameter and 1.7-2.5 pm long) and occur singly. They are motile and contain desulfoviridin. In the presence of sulfate, lactate is utilized as the sole electron donor and carbon source, but it is incompletely oxidized to acetate. D. aespoeensis grows lithoheterotrophically on H2, and acetate (as the carbon source). The electron acceptors include sulfate, thiosulfate and sulfur, but not nitrate and iron(III) hydroxide. NaCl is not required for growth, but up to 30 g/l is tolerated, and optimum growth occurs in the presence of 7 g/l. The temperature range for growth is between 4-35 degrees Celsius, with an optimum at 25-30 degrees Celsius. The optimum pH for growth is 7.5. D. aespoeensis differed from all other Desulfovibrio species (except D. longus) by its inability to utilize ethanol. (Adapted from PMID: 9542102). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Deltaproteobacteria |
Order: | Desulfovibrionales |
Family: | Desulfovibrionaceae |
Genus: | Desulfovibrio |
Species: | aespoeensis |
Strain | Aspo-2 |
Complete | Yes |
Sequencing centre | (05-JAN-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (30-DEC-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | Granitic rock aquifer at 600 m depth; Sweden, Dspv Island |
Isolation country | Sweden |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Obligate anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Animal intestinal microflora, Fresh water, Mud, Sea water, Soil |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Sporulating |
Metabolism | Hydrogen sulfide gas release Sulfate reducer |
Energy source | NA |
Diseases | NA |
Pathogenicity | NO |
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Nitrotoluene degradation
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis