Oceanithermus profundus DSM 14977
Names | Oceanithermus profundus DSM 14977 |
---|---|
Accession numbers | NC_014753, NC_014761 |
Background | Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) is an moderately thermophilic, organotrophic, microaerophilic, facultatively chemolithotrophic, Gram-positive bacterium isolated from a deep-sea hydrothermal vent site at 13 degrees N in the East Pacific Rise. Cells are Gram-negative, non-motile rods. The organism grows in the temperature range between 40 and 68 degrees Celsius, with an optimum at 60 degrees Celsius, and in the pH range is between 5.5-8.4, with an optimum around pH 7.5. The NaCl concentration for growth is in the range 10-50 g/l, with an optimum at 30 g/l. O. profundus grows chemoorganoheterotrophically with carbohydrates, proteinaceous substrates, organic acids and alcohols using oxygen or nitrate as electron acceptor. Alternatively, it is able to grow lithoheterotrophically with molecular hydrogen as the energy source. (Adapted from PMID: 12807196). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Deinococcus-Thermus |
Class: | Deinococci |
Order: | Thermales |
Family: | Thermaceae |
Genus: | Oceanithermus |
Species: | profundus |
Strain | DSM 14977 |
Complete | Yes |
Sequencing centre | (03-DEC-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (23-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | NA |
Isolation site | Deep-sea hot vent; 13N, East Pacific Rise |
Isolation country | Pacific Ocean |
Number of replicons | 2 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 1 |
Oxygen requirements | Microaerophilic |
Optimal temperature | 60.0 |
Temperature range | Thermophilic |
Habitat | Deep sea, Hydrothermal vent, Marine |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganoheterotroph, Lithoheterotroph, Organotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis