Calditerrivibrio nitroreducens DSM 19672
Names | Calditerrivibrio nitroreducens DSM 19672 |
---|---|
Accession numbers | NC_014749, NC_014758 |
Background | Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) is an anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative bacterium isolated from hot spring water from Yumata, Nagano, Japan. The cells are non-sporulating, motile by means of a single polar flagellum, vibrio-shaped and 1.4-2.0 um long. The optimal temperature for growth is 55 degrees Celsius. The pH range for growth is between 7.0-7.5. C.nitroreducens grows best in basal medium without the addition of NaCl. Acetate, pyruvate, lactate, fumarate, succinate, malate, yeast extract, peptone and Casamino acids are utilized as electron donors, with nitrate as the only electron acceptor. Ammonium is the end product from nitrate. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/49523 and PMID: 18599715). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Deferribacteres |
Class: | NA |
Order: | NA |
Family: | NA |
Genus: | NA |
Species: | NA |
Strain | DSM 19672 |
Complete | Yes |
Sequencing centre | (03-DEC-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (18-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS-FLX-Titanium, Illumina GAii |
Isolation site | Terrestrial hot spring; Japan, Nagano, Yumata |
Isolation country | Japan |
Number of replicons | 2 |
Gram staining properties | Negative |
Shape | NA |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | 55.0 |
Temperature range | Thermophilic |
Habitat | HostAssociated |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | Nitrate reducer |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis