Leadbetterella byssophila DSM 17132

Names | Leadbetterella byssophila DSM 17132 |
---|---|
Accession numbers | NC_014655 |
Background | Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) is a strictly aerobic Gram-negative bacterium isolated from rom cotton-waste compounds used for the cultivation of the oyster mushroom in South Korea. Cells are rod-shaped with a width of 0.6-0.9 mm and length of 2-7 mm. The colonies are circular, 1-2 mm in diameter, smooth, light orange, shiny and convex with entire margin when grown on TSA. With prolonged incubation, colonies become dark orange. Gliding motility is not observed. L. byssophila grows at temperatures of 15-45 degrees Celsius and at a pH range of 6.0-8.0. It grows in the presence of 1% (w/v) NaCl, but not at 3% NaCl. Growth is observed in 0.5% yeast extract broth. It is able to degrade aesculin, gelatin, starch, tyrosine and Tween 20, but not casein, cellulose, chitin, DNA or Tweens 40 and 80. It is sensitive to ampicillin, carbenicillin, lincomycin, streptomycin and tetracycline. Antibiotic resistance is observed to benzylpenicillin, gentamicin, neomycin, oleandomycin and polymyxin B. (Adapted from PMID: 16280486). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Bacteroidetes |
Class: | Cytophagia |
Order: | Cytophagales |
Family: | Cytophagaceae |
Genus: | Leadbetterella |
Species: | byssophila |
Strain | DSM 17132 |
Complete | Yes |
Sequencing centre | (05-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA (12-NOV-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, 454 |
Isolation site | Cotton-waste composts used as mushroom cultivation in South Korea |
Isolation country | South Korea |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | NA |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis