Eubacterium limosum KIST612
Names | Eubacterium limosum KIST612 |
---|---|
Accession numbers | NC_014624 |
Background | Eubacterium limosum (strain KIST612) is an acetogenic Gram-positive bacterium frequently isolated from an anaerobic digester and has a high growth rate on synthesis gas (CO; carbon monoxide) using it as a sole energy source. This organism produces acetate as well as butyrate and ethanol as fermentation products from syngas. Therefore, E. limosum has been considered for a model strain for bioenergy production from syngas (obtained from biomass). (Adapted from : http://www.ncbi.nlm.nih.gov/genomeprj/52281). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Clostridia |
Order: | Clostridiales |
Family: | Eubacteriaceae |
Genus: | Eubacterium |
Species: | limosum |
Strain | KIST612 |
Complete | Yes |
Sequencing centre | (22-OCT-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (27-SEP-2010) Computational and Synthetic Biology Laboratory, Korea University, Anam Campus, Anam-Dong 5-Ga, |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Illumina GAii, 454-GS-FLX |
Isolation site | anaerobic digester |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | NA |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 1 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | NA |
Habitat | NA |
Biotic relationship | NA |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | Acetate producer Carbon monoxide oxidizer Ethanol production |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Glycerolipid metabolism
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Glycerolipid metabolism
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis