Micromonospora aurantiaca ATCC 27029
Names | Micromonospora aurantiaca ATCC 27029 |
---|---|
Accession numbers | NC_014391 |
Background | Species of Micromonospora are important for biocontrol and bioremediation. They have incredible metabolic versatility, among which nitrogen fixation has been added to the traits exhibited by these microbes. Micromonospora species exhibit both saphrophytic (living off dead tissues) and potentially symbiotic lifestyles, and they are ubiquitous in the environment. They are found in soils, sediments, aquatic environments--fresh water, salty pools, and marine settings--as well as in the rumen of cattle and the guts of termites. In termite guts, they degrade plant cell walls and fibers, in this way providing carbon to their host. Several investigators have noted that Micromonospora species have lignocellulase activity. Micromonosporas also have a unique way of making spores. The spores are highly resistant to desiccation stress and may retain viability for hundreds of years. Knowing this genome will not only offer tools for studying the different lifestyles exhibited by these organisms, but will also open up opportunities to discover new pathways for biocontrol; for degradation of xenobiotics, plant fibers, and cell walls; and for interesting secondary metabolites. Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) is a Gram-positive bacterium. (Adapted from: http://genome.jgi-psf.org/micau/micau.home.html). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Actinobacteria |
Class: | Actinobacteria |
Order: | Actinomycetales |
Family: | Micromonosporaceae |
Genus: | Micromonospora |
Species: | aurantiaca |
Strain | ATCC 27029 |
Complete | Yes |
Sequencing centre | (05-AUG-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (11-AUG-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Illumina, 454 |
Isolation site | Soil |
Isolation country | Russia |
Number of replicons | 1 |
Gram staining properties | Positive |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 1 |
Oxygen requirements | Aerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Sporulating |
Metabolism | Polyisoprene rubber degrader |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Lysine degradation
Penicillin and cephalosporin biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine metabolism
Tryptophan metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of type II polyketide backbone
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Galactose metabolism
Fatty acid metabolism
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Geraniol degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Lysine degradation
Penicillin and cephalosporin biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine metabolism
Tryptophan metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Taurine and hypotaurine metabolism
Selenocompound metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Propanoate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Methane metabolism
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Aminoacyl-tRNA biosynthesis
Biosynthesis of type II polyketide backbone