Thermosediminibacter oceani DSM 16646
Names | Thermosediminibacter oceani DSM 16646 |
---|---|
Accession numbers | NC_014377 |
Background | Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) is an anaerobic, thermophilic, Gram-negative bacterium isolated from enrichment cultures obtained from deep sea sediments of Peru Margin collected during Leg 201 of the Ocean Drilling Program. The cells are straight to curved rods, 0.2-0.7 um in diameter and 1.5-16 um in length. Cells occur singly, in pairs, or in chains and tend to elongate and form aggregates. It grows with a range of pH from 6.3 to 9.3 with an optimum at 7.5 and a temperature range from 52 to 76 degrees Celsius with an optimum at 68 degrees Celsius. The salinity range for growth is from 0 to 6% (w/v), with an optimum at 1%. Cellobiose, fructose, galactose, glucose, maltose, mannose, raffinose, sucrose, trehalose, xylose, methanol, inositol, manitol, sorbitol, lactate, pyruvate serve as carbon and energy. Thiosulfate, elemental sulfur, and MnO2 can serve as electron acceptors. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1133078/374 and PMID: 15965715). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Clostridia |
Order: | Thermoanaerobacterales |
Family: | Thermoanaerobacterales Family III. Incertae Sedis |
Genus: | Thermosediminibacter |
Species: | oceani |
Strain | DSM 16646 |
Complete | Yes |
Sequencing centre | (02-AUG-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA (06-AUG-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, Illumina GAii, 454 |
Isolation site | Deep sea sediments (252 m below sea level) of Peru Margin collected during Leg 201 of the Ocean Drilling Program |
Isolation country | Peru |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | 68.0 |
Temperature range | Thermophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Lipoic acid metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis