Spirochaeta smaragdinae DSM 11293
Names | Spirochaeta smaragdinae DSM 11293 |
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Accession numbers | NC_014364 |
Background | Known members of the Spirochaeta genus are anaerobes or facultative anaerobes isolated from a variety of aquatic habitats such as the sediments and the water column of ponds, lakes, rivers and oceans.S.smaragdinae was isolated from and oil-injection production water sample of the Congo offshore oilfield Emerald. It is a strictly anaerobic, spiral bacterium with 0.3-0.5 um by 5-30 um long cells. It is motile via periplasmic, non-extracellular flagella and moves with a corkscrew-like motion. It grows between 20 and 40 degrees Celsius with an optimum temperature at 37 degrees Celsius. It is an obligate halophile, growing optimally at 5% NaCl and can use a number of organic compounds including fructose, glucose, glycerol for growth. It can reduce thiosulfate and elemental sulfur to sulfide (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1143106/sigs.1143106_pdf). (HAMAP: SPISS) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Spirochaetes |
Class: | Spirochaetes |
Order: | Spirochaetales |
Family: | Spirochaetaceae |
Genus: | Spirochaeta |
Species: | smaragdinae |
Strain | DSM 11293 |
Complete | Yes |
Sequencing centre | (02-AUG-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (23-JUL-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Illumina, 454 |
Isolation site | Oil field of Congo, Africa |
Isolation country | Congo |
Number of replicons | 1 |
Gram staining properties | NA |
Shape | Spirilla |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | Utilize carbohydrates |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | NA |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
One carbon pool by folate
Thiamine metabolism
Vitamin B6 metabolism
Pantothenate and CoA biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis