Pantoea vagans C9-1

Names | Pantoea vagans C9-1 |
---|---|
Accession numbers | NC_014258, NC_014561, NC_014562, NC_014563 |
Background | Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Proteobacteria |
Class: | Gammaproteobacteria |
Order: | Enterobacteriales |
Family: | Enterobacteriaceae |
Genus: | Pantoea |
Species: | vagans |
Strain | C9-1 |
Complete | Yes |
Sequencing centre | (04-OCT-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (26-AUG-2010) Division of Plant Protection, Forschungsanstalt Agroscope Changins-Waedenswil ACW, Schloss, |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS20 |
Isolation site | apple (Malus x domestica ?Jonathan?, MI, USA) |
Isolation country | USA |
Number of replicons | 4 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Facultative |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | HostAssociated |
Biotic relationship | Free living |
Host name | Malus x domestica |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Fatty acid metabolism
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Glycerophospholipid metabolism
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fructose and mannose metabolism
Fatty acid metabolism
Ubiquinone and other terpenoid-quinone biosynthesis
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Glutathione metabolism
Starch and sucrose metabolism
Amino sugar and nucleotide sugar metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Glycerophospholipid metabolism
Pyruvate metabolism
Glyoxylate and dicarboxylate metabolism
Butanoate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Nitrogen metabolism
Sulfur metabolism
Aminoacyl-tRNA biosynthesis