Zunongwangia profunda SM-A87
Names | Zunongwangia profunda SM-A87 |
---|---|
Accession numbers | NC_014041 |
Background | Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) is an orange-pigmented, strictly aerobic, oxidase- and catalase-positive, Gram-negative bacterium isolated at a depth of 1 245 m from deep-sea sediment in the southern Okinawa Trough with in situ temperature of 4.7 degrees Celsius. Z. profunda has various extracellular enzymes for carbohydrate, lipid and DNA degradation. These extracellular enzymes suggest that the bacterium is able to hydrolyze organic materials in the sediment, especially carbohydrates and proteinaceous organic nitrogen. It is also moderately halophilic. (Adapted from PMID: 20398413). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Bacteroidetes |
Class: | Flavobacteria |
Order: | Flavobacteriales |
Family: | Flavobacteriaceae |
Genus: | Zunongwangia |
Species: | profunda |
Strain | SM-A87 |
Complete | Yes |
Sequencing centre | (21-APR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA (22-JUN-2009) State Key Laboratory for Microbial Technology, Shandong University, 27 Shanda Nanlu, Jinan, Shandong |
Sequencing quality | Level 2: High-Quality Draft |
Sequencing depth | NA |
Sequencing method | Illumina |
Isolation site | NA |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | NA |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | NA |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | NA |
Biotic relationship | NA |
Host name | NA |
Cell arrangement | NA |
Sporulation | NA |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fatty acid biosynthesis
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pentose and glucuronate interconversions
Fatty acid biosynthesis
Synthesis and degradation of ketone bodies
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Glycine, serine and threonine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Arginine and proline metabolism
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Arginine and D-ornithine metabolism
D-Alanine metabolism
Streptomycin biosynthesis
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Vitamin B6 metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Lipoic acid metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Sulfur metabolism
Aminoacyl-tRNA biosynthesis