Denitrovibrio acetiphilus DSM 12809
Names | Denitrovibrio acetiphilus DSM 12809 |
---|---|
Accession numbers | NC_013943 |
Background | Denitrovibrio acetiphilus (strain DSM 12809 / N2460) is an obligatory anaerobic, dissimilatory nitrate-reducing Gram-negative bacterium isolated from an oil reservoir modeling column under nitrate enrichment in Norway. The cells are vibrio shaped and motile by a bipolar flagellum. D. acetiphilus grows well on acetate with nitrate as electron acceptor, producing ammonia. The presence of a 2-oxoglutarate dehydrogenase activity indicates that acetate is oxidized via the citric acid cycle. It grows at temperatures between 4 and 40 degrees Celsius and at a pH between 6.5 and 8.6. The optimum temperature is 35-37 degrees Celsius and no growth is obtained at 45 degrees Celsius. NaCl is not required for growth and D.acetiphilus grows well in medium containing up to 6% NaCl. (adapted from PMID: 10939668). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Deferribacteres |
Class: | NA |
Order: | NA |
Family: | NA |
Genus: | NA |
Species: | NA |
Strain | DSM 12809 |
Complete | Yes |
Sequencing centre | (04-MAR-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA (18-MAR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, 454-GS-FLX |
Isolation site | Oil reservoir model column |
Isolation country | Norway |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | No |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | 35.0 |
Temperature range | Mesophilic |
Habitat | Aquatic |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | Nitrate reducer |
Energy source | Chemoorganotroph |
Diseases | NA |
Pathogenicity | No |
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Pentose phosphate pathway
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
Pyruvate metabolism
C5-Branched dibasic acid metabolism
One carbon pool by folate
Carbon fixation pathways in prokaryotes
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Porphyrin and chlorophyll metabolism
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis