Acidaminococcus fermentans DSM 20731
Names | Acidaminococcus fermentans DSM 20731 |
---|---|
Accession numbers | NC_013740 |
Background | Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) is an anaerobic Gram-negative bacterium isolated from a pig gut. It can utilize amino acids as the sole source of energy for growth, but lactate, fumarate, malate, succinate, citrate, and pyruvate can not serve as energy sources for growth. Acetic and butyric acids and CO2 are produced. Growth is good at 30 to 37 degrees Celsius and poor or negative at 25 and 45 degrees Celsius. The cells do not survive heating at 60 degrees Celsius for 30 min. (Adapted from PMID: 5784223). (HAMAP: ACIFV) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Firmicutes |
Class: | Negativicutes |
Order: | Selenomonadales |
Family: | Acidaminococcaceae |
Genus: | Acidaminococcus |
Species: | fermentans |
Strain | DSM 20731 |
Complete | Yes |
Sequencing centre | (11-JAN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA (15-JAN-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | Sanger, Illumina, 454-GS-FLX |
Isolation site | Pig gut |
Isolation country | NA |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Cocci |
Mobility | No |
Flagellar presence | No |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Mesophilic |
Habitat | Multiple |
Biotic relationship | Free living |
Host name | Sus scrofa |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | NA |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Citrate cycle (TCA cycle)
Pentose phosphate pathway
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
D-Alanine metabolism
Lipopolysaccharide biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Pantothenate and CoA biosynthesis
Biotin metabolism
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis