Thermotoga naphthophila RKU-10
Names | Thermotoga naphthophila RKU-10 |
---|---|
Accession numbers | NC_013642 |
Background | Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) is an obligately anaerobic, hyperthermophilic and fermentative heterotrophic Gram-negative bacterium isolated from a deep subterranean oil reservoir in Niigata, Japan. It is rod-shaped with a `toga', a sheathlike structure with ballooning at both ends, which is characteristic of members of the order Thermotogales. T. naphthophila possesses the cellobiose transporter operon, but grows very poorly on cellulose. While it reduces elemental sulfur to hydrogen sulfide, its final cell yield and specific growth rate decrease in the presence of elemental sulfur. The temperature ranges for growth are 48-86 degrees Celsius with an optimum at 80 degrees Celsius. No growth is apparent at 47 or 87 degrees Celsius. The pH ranges for growth 5.4-9.0, with the optimum at pH 7. No growth is apparent at pH 5.2 or 9.5. (Adaptated from PMID: 11594624). (EBI Integr8) |
Taxonomy | |
Kingdom: | Bacteria |
Phylum: | Thermotogae |
Class: | Thermotogae |
Order: | Thermotogales |
Family: | Thermotogaceae |
Genus: | Thermotoga |
Species: | naphthophila |
Strain | RKU-10 |
Complete | Yes |
Sequencing centre | (14-DEC-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA (18-DEC-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA |
Sequencing quality | Level 6: Finished |
Sequencing depth | NA |
Sequencing method | 454-GS-FLX |
Isolation site | Production fluid of the Kubiki oil reservoir in Niigata Japan |
Isolation country | Japan |
Number of replicons | 1 |
Gram staining properties | Negative |
Shape | Bacilli |
Mobility | Yes |
Flagellar presence | Yes |
Number of membranes | 2 |
Oxygen requirements | Anaerobic |
Optimal temperature | NA |
Temperature range | Hyperthermophilic |
Habitat | Specialized |
Biotic relationship | Free living |
Host name | NA |
Cell arrangement | NA |
Sporulation | Nonsporulating |
Metabolism | NA |
Energy source | Heterotroph |
Diseases | NA |
Pathogenicity | No |
Glycolysis / Gluconeogenesis
Pentose phosphate pathway
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis
Pentose phosphate pathway
Galactose metabolism
Purine metabolism
Pyrimidine metabolism
Alanine, aspartate and glutamate metabolism
Cysteine and methionine metabolism
Valine, leucine and isoleucine biosynthesis
Lysine biosynthesis
Histidine metabolism
Phenylalanine, tyrosine and tryptophan biosynthesis
Selenocompound metabolism
D-Glutamine and D-glutamate metabolism
Streptomycin biosynthesis
Peptidoglycan biosynthesis
One carbon pool by folate
Thiamine metabolism
Riboflavin metabolism
Nicotinate and nicotinamide metabolism
Pantothenate and CoA biosynthesis
Folate biosynthesis
Terpenoid backbone biosynthesis
Aminoacyl-tRNA biosynthesis