BacMap

Definition	Ruegeria sp. TM1040, complete genome.
Accession	NC_008044
Length	3,200,938

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The map label for this gene is yjgI [C]

Identifier: 99080845

GI number: 99080845

Start: 1074159

End: 1074863

Strand: Reverse

Name: yjgI [C]

Synonym: TM1040_1004

Alternate gene names: 99080845

Gene position: 1074863-1074159 (Counterclockwise)

Preceding gene: 99080846

Following gene: 99080835

Centisome position: 33.58

GC content: 62.7

Gene sequence:

>705_bases
ATGATGCGCACTGTTTTGGTTACGGGCGGCACCTATGGTCTTGGACTGGCTATCGCGGCGCGGTTTGCACCTGACCACAA
TGTCCTGCGCTCTTTTAAGAAGACGCCGCCTCGCGACGATCTGGAGGCGCAACCCAACGTCGTCTCCTGCGCTTGCGACT
TGCTGCAGGACGGTGCAGCCGAGGATCTTGTCGCGCAGGCCATGGGTCAGTTTGGCCGCATCGATGTCATCGTGAACAAC
GCGGGCCTCGTGCAGAGCACGCCCAAGGCGCAGTTTGATCTCTCAGAGCACCGGAAGGTGTTTGAACTCAACACCATTGC
GCCGCAGGCCGTCCTGGCGGCCGCCTTGCCGCATTTGCGTCCGGGGGCCGCGATCGTCAATATTTCCTCGGTCAATGCCA
CCCTGCCGCCACGCGACGCGGCCAGCTATGGGGCGAGCAAGGCTGCGCTCAACCTCTGGACCAAAGCCATGGCAAAGGAA
CTTGGCCCCGAAGGAATCCGCGTCAATGCAGTGGCGCCCGGCGCCATCAATGTGCCGGAGGCGCCTCGCTCCGAAGAGCT
CACGCAGATTTTTGTGAAAGACACGGCGCTGGGGCGCATCGGCACACCCGACGACATCGCCAAGGCCGTGCGTTTTCTCG
CCTCCGAGGAGGCGAGCTTTATCACTGGCGAAATCCTGACGGTCGCGGGCGGCTACCGGCTCTGA

Upstream 100 bases:

>100_bases
GTACAGCCCGATTTCAAGCCTGAAATAAATCCTGAGGCCAAACAAACGCTGGTGCGGAGCGCCTTAGCTCAAGGCGCACG
ACAAACCCAAAGAGGATCTC

Downstream 100 bases:

>100_bases
GCTTACTGGGCCGCGCGCTCCATGGCGGGGCGAATGGTCTCTTCCAGAACCCGGCTGGTAATCGGCCCGGCAAAGCGCAG
AACCACCGTGCCGTCGCCGT

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAAEDLVAQAMGQFGRIDVIVNN
AGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLRPGAAIVNISSVNATLPPRDAASYGASKAALNLWTKAMAKE
LGPEGIRVNAVAPGAINVPEAPRSEELTQIFVKDTALGRIGTPDDIAKAVRFLASEEASFITGEILTVAGGYRL

Sequences:

>Translated_234_residues
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAAEDLVAQAMGQFGRIDVIVNN
AGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLRPGAAIVNISSVNATLPPRDAASYGASKAALNLWTKAMAKE
LGPEGIRVNAVAPGAINVPEAPRSEELTQIFVKDTALGRIGTPDDIAKAVRFLASEEASFITGEILTVAGGYRL
>Mature_234_residues
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAAEDLVAQAMGQFGRIDVIVNN
AGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLRPGAAIVNISSVNATLPPRDAASYGASKAALNLWTKAMAKE
LGPEGIRVNAVAPGAINVPEAPRSEELTQIFVKDTALGRIGTPDDIAKAVRFLASEEASFITGEILTVAGGYRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=36.3636363636364, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=37.1900826446281, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI59889578, Length=203, Percent_Identity=35.9605911330049, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=30.5785123966942, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=30, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=30.2788844621514, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30.8, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI126723750, Length=245, Percent_Identity=31.0204081632653, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=26.2295081967213, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=37.6344086021505, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI66933014, Length=205, Percent_Identity=26.8292682926829, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=26.865671641791, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=34.6368715083799, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI2367365, Length=232, Percent_Identity=31.4655172413793, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=31.0204081632653, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=31.1475409836066, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=32.6446280991736, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788459, Length=169, Percent_Identity=38.4615384615385, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=33.1967213114754, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789208, Length=240, Percent_Identity=29.5833333333333, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=27.5, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=30.0395256916996, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1786812, Length=246, Percent_Identity=28.4552845528455, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=29.296875, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787820, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787545, Length=194, Percent_Identity=25.7731958762887, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=32.258064516129, Blast_Score=117, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=32.3886639676113, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32.4, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=32.1969696969697, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=31.9230769230769, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=29.2307692307692, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=29.6577946768061, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=28.957528957529, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=29.0697674418605, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=30.327868852459, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=29.8804780876494, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=26.953125, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=29.2307692307692, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=26.7441860465116, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=27.3764258555133, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.9433962264151, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=26.3358778625954, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=27.2030651340996, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=27.5193798449612, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=26.7441860465116, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=27.5193798449612, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=27.0916334661355, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=30.3643724696356, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=27.3809523809524, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=25.531914893617, Blast_Score=63, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324126, Length=175, Percent_Identity=28, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=25.6544502617801, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=36.0655737704918, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=32.520325203252, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24644339, Length=244, Percent_Identity=31.1475409836066, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=32.2448979591837, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=31.4285714285714, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24644337, Length=191, Percent_Identity=35.6020942408377, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=28.8617886178862, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=28.6307053941909, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17737361, Length=248, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357673, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 24637; Mature: 24637

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAA
CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCH
EDLVAQAMGQFGRIDVIVNNAGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLR
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCCC
PGAAIVNISSVNATLPPRDAASYGASKAALNLWTKAMAKELGPEGIRVNAVAPGAINVPE
CCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
APRSEELTQIFVKDTALGRIGTPDDIAKAVRFLASEEASFITGEILTVAGGYRL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHCEEEEECCCCCC
>Mature Secondary Structure
MMRTVLVTGGTYGLGLAIAARFAPDHNVLRSFKKTPPRDDLEAQPNVVSCACDLLQDGAA
CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCH
EDLVAQAMGQFGRIDVIVNNAGLVQSTPKAQFDLSEHRKVFELNTIAPQAVLAAALPHLR
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCCC
PGAAIVNISSVNATLPPRDAASYGASKAALNLWTKAMAKELGPEGIRVNAVAPGAINVPE
CCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
APRSEELTQIFVKDTALGRIGTPDDIAKAVRFLASEEASFITGEILTVAGGYRL
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]