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The map label for this gene is ybiH [C]

Identifier: 99080823

GI number: 99080823

Start: 1050017

End: 1050601

Strand: Reverse

Name: ybiH [C]

Synonym: TM1040_0982

Alternate gene names: 99080823

Gene position: 1050601-1050017 (Counterclockwise)

Preceding gene: 99080826

Following gene: 99080819

Centisome position: 32.82

GC content: 58.8

Gene sequence:

>585_bases
ATGAGCGAAAGCAGCCCCCAACAGAGAAACGCAGAATCAACACGAAAGCGCATTCTTGCGGCGGCGCAGCGGCGTTTTTC
CAAACAGAGTTTTGATGCCACAGGGATGCGCGAAATCGCGGCAGAGGCAGGCGTCAACGTGGCGCTGGTGAACCGGTACT
TCGGCTCCAAAGAGCAGTTGTTCGAGGAGGCGGTTGTAGAGGCGATTACCATTGACGCCTTGCTGGCGGGCCCGCAGGAC
GGCTTTGGCAGGCGAACGGCATCCGCCATGCTTTCAAAAGATTTCAAATATATAGACCTTGACCCCACTGCAGCATTTGT
AAACTCTCTGGGCAGCCCGGTTGTCGGCGAGCGTCTACGACGCGCCGTAGAAGAACGGCTCTTGCCTGAAATCTCCGGCT
GGCTTGGAGGGGCACATGCGGATCAACGCGCTGCAATGATCTTCAGCGCCCTTTTGGGGTTTGATGTGCTGCGCCGCATG
GCCAGGATCGATGCCCTCAATACGCGCCATGGCCCCGTGCTCGAGGATCTCTGCGCCGCGACCCTGCAGAGTTACGTGGA
TGGCGCCCCGGACACAGAGGATTAG

Upstream 100 bases:

>100_bases
GGGGATGCGCTGTACTTGTAGCATCACCACATGTATACGAACGCTTACATGTGGCAATGCAGATAGTCAACAATCGTTTA
CACGTCAAGAGAAAGCCAAG

Downstream 100 bases:

>100_bases
TCAAATTCACGTTATTCGAATATACATCGAACTCGAGGAAGACGAAAACACGTGTTCCCGCAGCATGTGATATGTTGCGC
CAGAACACTCCGGGCCAAGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQLFEEAVVEAITIDALLAGPQD
GFGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLRRAVEERLLPEISGWLGGAHADQRAAMIFSALLGFDVLRRM
ARIDALNTRHGPVLEDLCAATLQSYVDGAPDTED

Sequences:

>Translated_194_residues
MSESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQLFEEAVVEAITIDALLAGPQD
GFGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLRRAVEERLLPEISGWLGGAHADQRAAMIFSALLGFDVLRRM
ARIDALNTRHGPVLEDLCAATLQSYVDGAPDTED
>Mature_193_residues
SESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQLFEEAVVEAITIDALLAGPQDG
FGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLRRAVEERLLPEISGWLGGAHADQRAAMIFSALLGFDVLRRMA
RIDALNTRHGPVLEDLCAATLQSYVDGAPDTED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21145; Mature: 21014

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHH
FEEAVVEAITIDALLAGPQDGFGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHH
RAVEERLLPEISGWLGGAHADQRAAMIFSALLGFDVLRRMARIDALNTRHGPVLEDLCAA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TLQSYVDGAPDTED
HHHHHHCCCCCCCC
>Mature Secondary Structure 
SESSPQQRNAESTRKRILAAAQRRFSKQSFDATGMREIAAEAGVNVALVNRYFGSKEQL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHH
FEEAVVEAITIDALLAGPQDGFGRRTASAMLSKDFKYIDLDPTAAFVNSLGSPVVGERLR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHH
RAVEERLLPEISGWLGGAHADQRAAMIFSALLGFDVLRRMARIDALNTRHGPVLEDLCAA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TLQSYVDGAPDTED
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA