| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080752
Identifier: 99080752
GI number: 99080752
Start: 971618
End: 972697
Strand: Reverse
Name: 99080752
Synonym: TM1040_0911
Alternate gene names: NA
Gene position: 972697-971618 (Counterclockwise)
Preceding gene: 99080753
Following gene: 99080750
Centisome position: 30.39
GC content: 63.33
Gene sequence:
>1080_bases ATGACCGGTGTTTTGCCCAGCCAGACGATCGAAACCATGCTCGCGCGTGCAGACATCAAAATCGACGCGCCGCTGAGCGA AGGTCAGATCCAGCCCGCAAGCCTTGACCTCCGTCTGGGCAAGGTCGCCTATCGCGTGCGCGCGTCATTCCTTGCGGGCC AAGGGCGCACCGTGGCCGAGCGCCTCGAAGAGTTTGAGATGCACCGCATCGACCTCAGCGAAGGTGCCGTGTTGGAAAAA GGCTGCGTCTATGTGGTGCCGCTGATGGAAGCACTCGACCTGCCCGATACAGTAAGCGCCGTAGCCAATGCCAAAAGCTC CACCGGGCGGCTCGACCTGCTGACCCGGACCATCACCGATGGGGGGGAGGAGTTCGACCGCATCCGCGCCGGTTACACTG GCCCGCTTTATGCCGAGATCTGCCCGCGCTCTTTTTCTGTGCTGGCCCGCCCCGGCATGCGGCTCAATCAGATCCGCTTT CGCGACGGGCAATCCGTGCTGGATGACGCGGCGCTCGCGGATCTCCACGCAAAGACCCCACTGGTGGATGGCGAGGCCGT GATCGAGGATGGGCTTGGCTTTTCTGTCGATCTGCGCCTGCCCGGCACCGATCTGGTGGGCTACCGCGCCAAACCGCACA CCGGCGTGATCGACCTCGACCGGATCTCCGCTTATGATCCTCGCGACTATTGGGAGGAAGTGCGCAGCGACAAGGGCCGG ATCATCCTTGATCCGGGTGCGTTCTACATCCTCGTGAGCCGCGAGGCGGTGCATATCCCGCCCGAATACGCGGCTGAGAT GGCGCCCTACCTTGCAATGGTGGGCGAGTTTCGCGTGCATTACGCGGGCTTTTTTGATCCCGGTTTTGGCCATGCCGCGG CCGGTGGGGCTGGCTCTCGCGGCGTGCTGGAGGTGCGCTGTCACGAGGCGCCTTTTGTGCTCGAACACGGGCAGGTGGTG GGCCGTCTGGTCTATGAGCGCATGGCCGAGCTGCCAGAGCAGCTCTATGGCGCGGGGATTGCCTCAAACTATCAGGGCCA GGGGCTGAAACTCTCGAAACATTTCCGCAGCCCCAGCTGA
Upstream 100 bases:
>100_bases TTTTCCAAAAGAATTCGCAACGCGCATTCTGCGTATTGTGGCATGACAGAATATGCGTCAGCATCCCTCGGGACAGGGAC GCCATCAGGGAACCGCAGCT
Downstream 100 bases:
>100_bases CAATGGGTCAGCGCGGGTAGCTGACACTTTCAAGATCGGCGGTGACATCCGCTTGCGCAGAGCGTTCAAGCACCGTCGAA AGCGTCAGATACGTGCTGGT
Product: 2'-deoxycytidine 5'-triphosphate deaminase
Products: dUTP; NH3
Alternate protein names: 2-Deoxycytidine 5-Triphosphate Deaminase; 2-Deoxycytidine 5'-Triphosphate Deaminase Superfamily; 2`-Deoxycytidine 5`-Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEK GCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRF RDGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVV GRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS
Sequences:
>Translated_359_residues MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEK GCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRF RDGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVV GRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS >Mature_358_residues TGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEKG CVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFR DGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGRI ILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVVG RLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS
Specific function: Unknown
COG id: COG0717
COG function: function code F; Deoxycytidine deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.4.13
Molecular weight: Translated: 39174; Mature: 39043
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAE CCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH RLEEFEMHRIDLSEGAVLEKGCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITD HHHHHHHHEEECCCCCEECCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCEEEEHHHHCC GGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFRDGQSVLDDAALADLHAKTP CHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC LVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR CCCCHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEEEHHHCCCCCCHHHHHHHHCCCCC IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSR EEECCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC GVLEVRCHEAPFVLEHGQVVGRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS CEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHCCCCC >Mature Secondary Structure TGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAE CCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH RLEEFEMHRIDLSEGAVLEKGCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITD HHHHHHHHEEECCCCCEECCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCEEEEHHHHCC GGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFRDGQSVLDDAALADLHAKTP CHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC LVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR CCCCHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEEEHHHCCCCCCHHHHHHHHCCCCC IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSR EEECCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC GVLEVRCHEAPFVLEHGQVVGRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS CEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dCTP; H2O
Specific reaction: dCTP + H2O = dUTP + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA