Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080752

Identifier: 99080752

GI number: 99080752

Start: 971618

End: 972697

Strand: Reverse

Name: 99080752

Synonym: TM1040_0911

Alternate gene names: NA

Gene position: 972697-971618 (Counterclockwise)

Preceding gene: 99080753

Following gene: 99080750

Centisome position: 30.39

GC content: 63.33

Gene sequence:

>1080_bases
ATGACCGGTGTTTTGCCCAGCCAGACGATCGAAACCATGCTCGCGCGTGCAGACATCAAAATCGACGCGCCGCTGAGCGA
AGGTCAGATCCAGCCCGCAAGCCTTGACCTCCGTCTGGGCAAGGTCGCCTATCGCGTGCGCGCGTCATTCCTTGCGGGCC
AAGGGCGCACCGTGGCCGAGCGCCTCGAAGAGTTTGAGATGCACCGCATCGACCTCAGCGAAGGTGCCGTGTTGGAAAAA
GGCTGCGTCTATGTGGTGCCGCTGATGGAAGCACTCGACCTGCCCGATACAGTAAGCGCCGTAGCCAATGCCAAAAGCTC
CACCGGGCGGCTCGACCTGCTGACCCGGACCATCACCGATGGGGGGGAGGAGTTCGACCGCATCCGCGCCGGTTACACTG
GCCCGCTTTATGCCGAGATCTGCCCGCGCTCTTTTTCTGTGCTGGCCCGCCCCGGCATGCGGCTCAATCAGATCCGCTTT
CGCGACGGGCAATCCGTGCTGGATGACGCGGCGCTCGCGGATCTCCACGCAAAGACCCCACTGGTGGATGGCGAGGCCGT
GATCGAGGATGGGCTTGGCTTTTCTGTCGATCTGCGCCTGCCCGGCACCGATCTGGTGGGCTACCGCGCCAAACCGCACA
CCGGCGTGATCGACCTCGACCGGATCTCCGCTTATGATCCTCGCGACTATTGGGAGGAAGTGCGCAGCGACAAGGGCCGG
ATCATCCTTGATCCGGGTGCGTTCTACATCCTCGTGAGCCGCGAGGCGGTGCATATCCCGCCCGAATACGCGGCTGAGAT
GGCGCCCTACCTTGCAATGGTGGGCGAGTTTCGCGTGCATTACGCGGGCTTTTTTGATCCCGGTTTTGGCCATGCCGCGG
CCGGTGGGGCTGGCTCTCGCGGCGTGCTGGAGGTGCGCTGTCACGAGGCGCCTTTTGTGCTCGAACACGGGCAGGTGGTG
GGCCGTCTGGTCTATGAGCGCATGGCCGAGCTGCCAGAGCAGCTCTATGGCGCGGGGATTGCCTCAAACTATCAGGGCCA
GGGGCTGAAACTCTCGAAACATTTCCGCAGCCCCAGCTGA

Upstream 100 bases:

>100_bases
TTTTCCAAAAGAATTCGCAACGCGCATTCTGCGTATTGTGGCATGACAGAATATGCGTCAGCATCCCTCGGGACAGGGAC
GCCATCAGGGAACCGCAGCT

Downstream 100 bases:

>100_bases
CAATGGGTCAGCGCGGGTAGCTGACACTTTCAAGATCGGCGGTGACATCCGCTTGCGCAGAGCGTTCAAGCACCGTCGAA
AGCGTCAGATACGTGCTGGT

Product: 2'-deoxycytidine 5'-triphosphate deaminase

Products: dUTP; NH3

Alternate protein names: 2-Deoxycytidine 5-Triphosphate Deaminase; 2-Deoxycytidine 5'-Triphosphate Deaminase Superfamily; 2`-Deoxycytidine 5`-Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase Protein; Deoxycytidine Triphosphate Deaminase

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEK
GCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRF
RDGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR
IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVV
GRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS

Sequences:

>Translated_359_residues
MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEK
GCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRF
RDGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR
IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVV
GRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS
>Mature_358_residues
TGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAERLEEFEMHRIDLSEGAVLEKG
CVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITDGGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFR
DGQSVLDDAALADLHAKTPLVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGRI
ILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSRGVLEVRCHEAPFVLEHGQVVG
RLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS

Specific function: Unknown

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.5.4.13

Molecular weight: Translated: 39174; Mature: 39043

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAE
CCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH
RLEEFEMHRIDLSEGAVLEKGCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITD
HHHHHHHHEEECCCCCEECCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCEEEEHHHHCC
GGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFRDGQSVLDDAALADLHAKTP
CHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC
LVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR
CCCCHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEEEHHHCCCCCCHHHHHHHHCCCCC
IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSR
EEECCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC
GVLEVRCHEAPFVLEHGQVVGRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS
CEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHCCCCC
>Mature Secondary Structure 
TGVLPSQTIETMLARADIKIDAPLSEGQIQPASLDLRLGKVAYRVRASFLAGQGRTVAE
CCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH
RLEEFEMHRIDLSEGAVLEKGCVYVVPLMEALDLPDTVSAVANAKSSTGRLDLLTRTITD
HHHHHHHHEEECCCCCEECCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCEEEEHHHHCC
GGEEFDRIRAGYTGPLYAEICPRSFSVLARPGMRLNQIRFRDGQSVLDDAALADLHAKTP
CHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCC
LVDGEAVIEDGLGFSVDLRLPGTDLVGYRAKPHTGVIDLDRISAYDPRDYWEEVRSDKGR
CCCCHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEEEHHHCCCCCCHHHHHHHHCCCCC
IILDPGAFYILVSREAVHIPPEYAAEMAPYLAMVGEFRVHYAGFFDPGFGHAAAGGAGSR
EEECCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCC
GVLEVRCHEAPFVLEHGQVVGRLVYERMAELPEQLYGAGIASNYQGQGLKLSKHFRSPS
CEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dCTP; H2O

Specific reaction: dCTP + H2O = dUTP + NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA