Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080732

Identifier: 99080732

GI number: 99080732

Start: 952013

End: 953197

Strand: Reverse

Name: 99080732

Synonym: TM1040_0891

Alternate gene names: NA

Gene position: 953197-952013 (Counterclockwise)

Preceding gene: 99080733

Following gene: 99080731

Centisome position: 29.78

GC content: 60.68

Gene sequence:

>1185_bases
ATGTTTCAACCCTTCTTCGAGAACCTGCGCAACGCCGCCGTGCCGGTCTCCTTGCGCGAATATCTCGCCTTTCTCGAAGG
GCTGAAGGCGGGTCTCGTCACCTATGACGTGGAGGCGTTCTACTACCTCGCGCGCGCCGTCATGGTCAAAGACGAGCGCA
ACCTCGACAAATTCGACCGCGCCTTTGCCGCCACCTTTGAAGGCCTCGACCAGATCCCCGCCTCTGCTGTGATGGACGCC
GTGGACATTCCCGAAGAGTGGCTGCGCAAGATGGCGGAGAAACATCTCTCGCCTGAAGAACGCGCCGAGATTGAGGCTCT
GGGCGGTTTTGACAAGCTGATGGAGACACTCAAGGAGCGCCTGAAGGAGCAAGAAGGCCGCCATCAGGGGGGGAACAAAT
GGATCGGCACCGCCGGCACCTCTCCCTTTGGCGCCTATGGCTACAACCCCGAAGGCGTGCGCATCGGCCAGAAAGAGAGC
CGCCATCAGCGCGCGGTCAAGGTCTGGGACAAGCGCGAGTTCAAGAACCTCGATGGCGATGTTGAATTGGGCACCCGCAA
TATCAAGGTTGCGCTGAAGCGCCTGCGCCGCTGGGTGCGCGAGGGCGCACAAGAAGAGCTCGACCTGGACGGCACCATTC
GCGCAACCGCCGAAAACGGCTATCTCGACGTGAAAACCCGCCCCGAGCGCCACAACGCCGCCAAGGTGTTGCTGTTTCTC
GATGTGGGCGGGTCGATGGACCCGCATATCAAGCTCGTCGAAGAGCTGTTCTCCGCCGCCCGCAGCGAGTTCAAACATCT
GGAGTACTACTACTTCCACAACTGCCTCTATGAAGGCGTCTGGCGTGACAATCGCCGCCGCTGGGACGCGCAGACCCCGA
CCCATGAGGTGCTGCGCACCTATGGACCGGATTACAAGTGCATCTTTGTGGGCGATGCGTCGATGTCGCCCTACGAGATC
TCCTATCCGGGCGGTGCCAATGAACATTGGAACAAAGAGGCCGGTCAGGTCTGGCTGGAGCGCGCGCGCGACCAATGGAA
TTCACATCTCTGGATCAACCCGGTGCCCGAGAAATACTGGGGCTATACCCATTCGATCCAGATGATCCGCGAGATCTTTG
AGGATCGCATGGTGCCGATGACGCTCGACGGGCTGGAGCGCGGCATGCGGGAGCTCACCCGCTAG

Upstream 100 bases:

>100_bases
GTCTACGGCATGATCTTTGGTATTCTCGGCCTGTTCGCCACCATCGTCACCCACCGCATGATGATCTGACGCTGACCTGC
CCCAAACCGACGGAGCCCCC

Downstream 100 bases:

>100_bases
TCTTCGGTTAACATGCTGTAATGTAACCGTTCTCCGCGTAGGCAACCCGGATCTGGGGGGCGACCTGCGGCCTGCCCCAA
CAAAAAGTATCAGCCCTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA
VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES
RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL
DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI
SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR

Sequences:

>Translated_394_residues
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA
VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES
RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL
DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI
SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
>Mature_394_residues
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA
VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES
RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL
DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI
SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR

Specific function: Unknown

COG id: COG3825

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45805; Mature: 45805

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFAATFEGLDQIPASAVMDAVDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKER
HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
LKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFKNLDGD
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
VELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL
EEECCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCEEEECCCCCCCCCEEEEEEE
DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRT
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
YGPDYKCIFVGDASMSPYEISYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYW
CCCCEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC
GYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
CHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCC
>Mature Secondary Structure
MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFAATFEGLDQIPASAVMDAVDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKER
HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
LKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFKNLDGD
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
VELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL
EEECCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCEEEECCCCCCCCCEEEEEEE
DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRT
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
YGPDYKCIFVGDASMSPYEISYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYW
CCCCEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC
GYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
CHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA