Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080732
Identifier: 99080732
GI number: 99080732
Start: 952013
End: 953197
Strand: Reverse
Name: 99080732
Synonym: TM1040_0891
Alternate gene names: NA
Gene position: 953197-952013 (Counterclockwise)
Preceding gene: 99080733
Following gene: 99080731
Centisome position: 29.78
GC content: 60.68
Gene sequence:
>1185_bases ATGTTTCAACCCTTCTTCGAGAACCTGCGCAACGCCGCCGTGCCGGTCTCCTTGCGCGAATATCTCGCCTTTCTCGAAGG GCTGAAGGCGGGTCTCGTCACCTATGACGTGGAGGCGTTCTACTACCTCGCGCGCGCCGTCATGGTCAAAGACGAGCGCA ACCTCGACAAATTCGACCGCGCCTTTGCCGCCACCTTTGAAGGCCTCGACCAGATCCCCGCCTCTGCTGTGATGGACGCC GTGGACATTCCCGAAGAGTGGCTGCGCAAGATGGCGGAGAAACATCTCTCGCCTGAAGAACGCGCCGAGATTGAGGCTCT GGGCGGTTTTGACAAGCTGATGGAGACACTCAAGGAGCGCCTGAAGGAGCAAGAAGGCCGCCATCAGGGGGGGAACAAAT GGATCGGCACCGCCGGCACCTCTCCCTTTGGCGCCTATGGCTACAACCCCGAAGGCGTGCGCATCGGCCAGAAAGAGAGC CGCCATCAGCGCGCGGTCAAGGTCTGGGACAAGCGCGAGTTCAAGAACCTCGATGGCGATGTTGAATTGGGCACCCGCAA TATCAAGGTTGCGCTGAAGCGCCTGCGCCGCTGGGTGCGCGAGGGCGCACAAGAAGAGCTCGACCTGGACGGCACCATTC GCGCAACCGCCGAAAACGGCTATCTCGACGTGAAAACCCGCCCCGAGCGCCACAACGCCGCCAAGGTGTTGCTGTTTCTC GATGTGGGCGGGTCGATGGACCCGCATATCAAGCTCGTCGAAGAGCTGTTCTCCGCCGCCCGCAGCGAGTTCAAACATCT GGAGTACTACTACTTCCACAACTGCCTCTATGAAGGCGTCTGGCGTGACAATCGCCGCCGCTGGGACGCGCAGACCCCGA CCCATGAGGTGCTGCGCACCTATGGACCGGATTACAAGTGCATCTTTGTGGGCGATGCGTCGATGTCGCCCTACGAGATC TCCTATCCGGGCGGTGCCAATGAACATTGGAACAAAGAGGCCGGTCAGGTCTGGCTGGAGCGCGCGCGCGACCAATGGAA TTCACATCTCTGGATCAACCCGGTGCCCGAGAAATACTGGGGCTATACCCATTCGATCCAGATGATCCGCGAGATCTTTG AGGATCGCATGGTGCCGATGACGCTCGACGGGCTGGAGCGCGGCATGCGGGAGCTCACCCGCTAG
Upstream 100 bases:
>100_bases GTCTACGGCATGATCTTTGGTATTCTCGGCCTGTTCGCCACCATCGTCACCCACCGCATGATGATCTGACGCTGACCTGC CCCAAACCGACGGAGCCCCC
Downstream 100 bases:
>100_bases TCTTCGGTTAACATGCTGTAATGTAACCGTTCTCCGCGTAGGCAACCCGGATCTGGGGGGCGACCTGCGGCCTGCCCCAA CAAAAAGTATCAGCCCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
Sequences:
>Translated_394_residues MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR >Mature_394_residues MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDRAFAATFEGLDQIPASAVMDA VDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKERLKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKES RHQRAVKVWDKREFKNLDGDVELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRTYGPDYKCIFVGDASMSPYEI SYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYWGYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45805; Mature: 45805
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDR CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AFAATFEGLDQIPASAVMDAVDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKER HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH LKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFKNLDGD HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC VELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL EEECCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCEEEECCCCCCCCCEEEEEEE DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRT ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH YGPDYKCIFVGDASMSPYEISYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYW CCCCEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC GYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR CHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCC >Mature Secondary Structure MFQPFFENLRNAAVPVSLREYLAFLEGLKAGLVTYDVEAFYYLARAVMVKDERNLDKFDR CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH AFAATFEGLDQIPASAVMDAVDIPEEWLRKMAEKHLSPEERAEIEALGGFDKLMETLKER HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH LKEQEGRHQGGNKWIGTAGTSPFGAYGYNPEGVRIGQKESRHQRAVKVWDKREFKNLDGD HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC VELGTRNIKVALKRLRRWVREGAQEELDLDGTIRATAENGYLDVKTRPERHNAAKVLLFL EEECCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCEEEECCCCCCCCCEEEEEEE DVGGSMDPHIKLVEELFSAARSEFKHLEYYYFHNCLYEGVWRDNRRRWDAQTPTHEVLRT ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH YGPDYKCIFVGDASMSPYEISYPGGANEHWNKEAGQVWLERARDQWNSHLWINPVPEKYW CCCCEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC GYTHSIQMIREIFEDRMVPMTLDGLERGMRELTR CHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA