Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080725
Identifier: 99080725
GI number: 99080725
Start: 943379
End: 943834
Strand: Reverse
Name: 99080725
Synonym: TM1040_0884
Alternate gene names: NA
Gene position: 943834-943379 (Counterclockwise)
Preceding gene: 99080730
Following gene: 99080724
Centisome position: 29.49
GC content: 60.53
Gene sequence:
>456_bases ATGACCAGTTACTCGACCAATCTGCCGCCGACCCCGCAACAGGGCTGGCTCGCCCGAAGCGAATCCTGGCTCGATTCTAA AGGCAAAGGCGCGTGGATCGCCGCAATGGTCCTTGGCTTTGTCTTCGTCTGGCCCGTCGGCCTTGCAATCCTCGCCTACA TGATCTGGAGCAAACGCATGTTCAATTCTTCCTGCCGCCGCCGTTCGACCCATATGCACCGTGGCTTTCATGCGATGAAA AGCAGTGGTAACGGTGCGTTCGACGCCTACAAAGCCGACACTCTGGCGCGGCTTGAACAAGAGCAGACCGATTTCGAAGC CTTCCTCGGCCGGCTGCGCGCCGCCAAGGACAAAGCTGAATTCGATCAGTTCATGGATGAGCGCGCCGCGCGCCCCGACG AGGCCAATGACGCAGACGACGCACCCCAGGATGGCGCTCGCCCGTCCAAAGCCTGA
Upstream 100 bases:
>100_bases GTGAAAAACATTTACATGCGCCCTTGAAGGCACTGGCAGCGTTGCACATATCGGTGATGTAAATTGAATTCACATTCAAC CAGCACCGTGGAGACCCAGA
Downstream 100 bases:
>100_bases CACCATCACTCCCTGCCCGGCTCCCCCCGGGCAGCATCCCCCCACCCTGCCACTCTCAGGAGCCCCGAATGACCGCCCTC CCCGATCCAGACTTGCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MTSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRMFNSSCRRRSTHMHRGFHAMK SSGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAEFDQFMDERAARPDEANDADDAPQDGARPSKA
Sequences:
>Translated_151_residues MTSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRMFNSSCRRRSTHMHRGFHAMK SSGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAEFDQFMDERAARPDEANDADDAPQDGARPSKA >Mature_150_residues TSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRMFNSSCRRRSTHMHRGFHAMKS SGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAEFDQFMDERAARPDEANDADDAPQDGARPSKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16939; Mature: 16808
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRM CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNSSCRRRSTHMHRGFHAMKSSGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAE HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FDQFMDERAARPDEANDADDAPQDGARPSKA HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSYSTNLPPTPQQGWLARSESWLDSKGKGAWIAAMVLGFVFVWPVGLAILAYMIWSKRM CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNSSCRRRSTHMHRGFHAMKSSGNGAFDAYKADTLARLEQEQTDFEAFLGRLRAAKDKAE HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FDQFMDERAARPDEANDADDAPQDGARPSKA HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA