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The map label for this gene is rnpA

Identifier: 94985667

GI number: 94985667

Start: 1667688

End: 1668119

Strand: Reverse

Name: rnpA

Synonym: Dgeo_1567

Alternate gene names: 94985667

Gene position: 1668119-1667688 (Counterclockwise)

Preceding gene: 94985668

Following gene: 94985666

Centisome position: 67.61

GC content: 71.06

Gene sequence:

>432_bases
TTGAAGGGGGAGCGCGAGTTCCGGCGGGTGCGCCAGCAGGGCGTGGCGCTGCGCGATCCCCTTTTTACCCTGCGGGTCAC
CGATTATCGCCCCCGGCACGGTGAAGTGTGGCGACCACAGGCCATCATTGGCATCGTGGTCTCCAAAAAGACGTTGCGCC
GAGCGGTGGACCGCAACCGTGCCCGCCGCCGTGTGCGCGAGGCGCTGCGGACGCTGCCGGGCGGCCTGCCCCCCTGCCGC
GCGATCCTGTTGCCCAACCCCGGTGTGCTGACGGTCCCCTTTCCCGAATTGCAGGCGGCCCTTGTGCGGGTGCTCGCGCA
GGTGCCCGGCCGCGTGAAGCGGAAGGGCGGTGGACCGGGTGGGAACCGCCGCTCCGCCCCTCCCGGATCTGCCCCCCTGA
CCGACGATGGGCGCCTCAGAGGAGAGCCATGA

Upstream 100 bases:

>100_bases
GCGACGAGTAACGCTCGCCGTCAGGAGCGGGTCTATCGTTCCCCCCGATGCCAGCAGCGCCACCCAGGAGCGGCCCCGCC
GTCCGGTGGCGCTGGCCGCA

Downstream 100 bases:

>100_bases
GCGCCGCTGCTCGTGGCCTGGTGCGGCTCGTCAAGAGCTACCAGCGCCACCTCTCGCCGCGCAAGCCCGCACCCACCTGC
CGCTTCACGCCCACCTGTTC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKGEREFRRVRQQGVALRDPLFTLRVTDYRPRHGEVWRPQAIIGIVVSKKTLRRAVDRNRARRRVREALRTLPGGLPPCR
AILLPNPGVLTVPFPELQAALVRVLAQVPGRVKRKGGGPGGNRRSAPPGSAPLTDDGRLRGEP

Sequences:

>Translated_143_residues
MKGEREFRRVRQQGVALRDPLFTLRVTDYRPRHGEVWRPQAIIGIVVSKKTLRRAVDRNRARRRVREALRTLPGGLPPCR
AILLPNPGVLTVPFPELQAALVRVLAQVPGRVKRKGGGPGGNRRSAPPGSAPLTDDGRLRGEP
>Mature_143_residues
MKGEREFRRVRQQGVALRDPLFTLRVTDYRPRHGEVWRPQAIIGIVVSKKTLRRAVDRNRARRRVREALRTLPGGLPPCR
AILLPNPGVLTVPFPELQAALVRVLAQVPGRVKRKGGGPGGNRRSAPPGSAPLTDDGRLRGEP

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_DEIGD (Q1IY22)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_605031.1
- ProteinModelPortal:   Q1IY22
- SMR:   Q1IY22
- STRING:   Q1IY22
- GeneID:   4057258
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_1567
- NMPDR:   fig|68909.1.peg.1649
- eggNOG:   COG0594
- HOGENOM:   HBG452544
- OMA:   RDPLFTL
- ProtClustDB:   CLSK445430
- BioCyc:   DGEO319795:DGEO_1567-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 15870; Mature: 15870

Theoretical pI: Translated: 12.44; Mature: 12.44

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGEREFRRVRQQGVALRDPLFTLRVTDYRPRHGEVWRPQAIIGIVVSKKTLRRAVDRNR
CCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARRRVREALRTLPGGLPPCRAILLPNPGVLTVPFPELQAALVRVLAQVPGRVKRKGGGPG
HHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCC
GNRRSAPPGSAPLTDDGRLRGEP
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKGEREFRRVRQQGVALRDPLFTLRVTDYRPRHGEVWRPQAIIGIVVSKKTLRRAVDRNR
CCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARRRVREALRTLPGGLPPCRAILLPNPGVLTVPFPELQAALVRVLAQVPGRVKRKGGGPG
HHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCC
GNRRSAPPGSAPLTDDGRLRGEP
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA