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The map label for this gene is ydiC [H]

Identifier: 94985625

GI number: 94985625

Start: 1616058

End: 1616642

Strand: Reverse

Name: ydiC [H]

Synonym: Dgeo_1525

Alternate gene names: 94985625

Gene position: 1616642-1616058 (Counterclockwise)

Preceding gene: 94985627

Following gene: 94985622

Centisome position: 65.53

GC content: 68.89

Gene sequence:

>585_bases
ATGCGCGGCATGCAAGCGTTTGCCGCTCCCGTGACCCTCGCCCTGGACACCGCCACGCCCTTCCTGACCCTGGCGCTGAC
CTGGGAGGGCGGCGAGCTTCAGCTTTCCGAGGAGGTGGGCCGCGCCCATGCCGAGCGGTTGGCAGACGCGGTGCAGTCCC
TGTTCGAACGGGCCGGATTGTCCTTTCGCGCCGACCGAATGGTGATTGGAACCGGGCCGGGTTCATACACCGGAGTTCGT
GTCGGCGCGAGCTACGCGTTGGGTTTGGGGCGCGCGTGGAATACGCCGGTGCGCGGTGTCTCTACTCTCGAAGCCCTGGT
GCGCGGCCCGGATGGGACCGTCCCTGAGGGGGAGGTGGCCGTTTCCCTGGACGCCCGGCGCGGCAATGTCTACGGCGCGG
TGTACGAGGTCCGTGGCGGCAGCGTCACGCGAGTCATTCACCCGCCCCAGAAGCGGCCCCTGGAAGCTTTCGAGGCACTG
ACGCTGGGCCTGCCGCACCACCGTGACACGGTGCCGGATGGCCTCGCCCTGCTGCGGGCGGGTCTGGATCATGGAGAACG
TGCGTGGACGCTGGCCTACCTCTAG

Upstream 100 bases:

>100_bases
GTCATGATAGGCTCACCATACCACCGGGCCGTCATACGCCGAATCTCCCCACCGTCACGTTCCCAAGGCGGTGACAGCCG
CCCGCGGCGGGGGGCCTAGA

Downstream 100 bases:

>100_bases
CAAGGGCGGACCTGAAGCAAGAACGTGAGCCAGGAGAACTTCCGGCGAACGCTCGGCCTGACTTTCCTGAGGCGTGACGT
ACGCCTGAGAGTGGCTTACA

Product: peptidase M22, glycoprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRGMQAFAAPVTLALDTATPFLTLALTWEGGELQLSEEVGRAHAERLADAVQSLFERAGLSFRADRMVIGTGPGSYTGVR
VGASYALGLGRAWNTPVRGVSTLEALVRGPDGTVPEGEVAVSLDARRGNVYGAVYEVRGGSVTRVIHPPQKRPLEAFEAL
TLGLPHHRDTVPDGLALLRAGLDHGERAWTLAYL

Sequences:

>Translated_194_residues
MRGMQAFAAPVTLALDTATPFLTLALTWEGGELQLSEEVGRAHAERLADAVQSLFERAGLSFRADRMVIGTGPGSYTGVR
VGASYALGLGRAWNTPVRGVSTLEALVRGPDGTVPEGEVAVSLDARRGNVYGAVYEVRGGSVTRVIHPPQKRPLEAFEAL
TLGLPHHRDTVPDGLALLRAGLDHGERAWTLAYL
>Mature_194_residues
MRGMQAFAAPVTLALDTATPFLTLALTWEGGELQLSEEVGRAHAERLADAVQSLFERAGLSFRADRMVIGTGPGSYTGVR
VGASYALGLGRAWNTPVRGVSTLEALVRGPDGTVPEGEVAVSLDARRGNVYGAVYEVRGGSVTRVIHPPQKRPLEAFEAL
TLGLPHHRDTVPDGLALLRAGLDHGERAWTLAYL

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=126, Percent_Identity=37.3015873015873, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 20654; Mature: 20654

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGMQAFAAPVTLALDTATPFLTLALTWEGGELQLSEEVGRAHAERLADAVQSLFERAGL
CCCCHHHHCCEEEEEECCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC
SFRADRMVIGTGPGSYTGVRVGASYALGLGRAWNTPVRGVSTLEALVRGPDGTVPEGEVA
CEECCEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEE
VSLDARRGNVYGAVYEVRGGSVTRVIHPPQKRPLEAFEALTLGLPHHRDTVPDGLALLRA
EEEECCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
GLDHGERAWTLAYL
CCCCCCCEEEEEEC
>Mature Secondary Structure
MRGMQAFAAPVTLALDTATPFLTLALTWEGGELQLSEEVGRAHAERLADAVQSLFERAGL
CCCCHHHHCCEEEEEECCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCC
SFRADRMVIGTGPGSYTGVRVGASYALGLGRAWNTPVRGVSTLEALVRGPDGTVPEGEVA
CEECCEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEE
VSLDARRGNVYGAVYEVRGGSVTRVIHPPQKRPLEAFEALTLGLPHHRDTVPDGLALLRA
EEEECCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
GLDHGERAWTLAYL
CCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]