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The map label for this gene is araQ [H]

Identifier: 94972191

GI number: 94972191

Start: 303612

End: 304484

Strand: Direct

Name: araQ [H]

Synonym: Dgeo_2724

Alternate gene names: 94972191

Gene position: 303612-304484 (Clockwise)

Preceding gene: 94972192

Following gene: 94972190

Centisome position: 52.88

GC content: 60.82

Gene sequence:

>873_bases
ATGACGGACTTGGCGCCCACCTCCTCGGCACGTCCTGCTCCGTCCCGCCGCCGAATGCCGCGCGACCTGCCGCGGTTCAT
CGTGCTGTGCGTGCTGTCGGTGCTGTTTTTGGCGCCGATCTACTGGATGATCGCCACATCGCTGAAGCCGGAGGCCGATA
CCATCGCGACGCCGGTGCAGTGGATTCCGCGGACCATCACGTTCGACAACTACCGCGAGGTGCTGACCTCACCGGACGGC
AATATTTTGCGCTGGACCTGGAACTCATTTCTCGTGGCGGCCATCTTCACGCTGCTGCATGTGGCGCTATGTGCGCTGAC
GGCCTATCCCCTGGCACGGATGCGCTTTCCGGGGCGCGACGCTTGGTTCTGGTTCATCCTGTCCAGTTTGATGGTTCCCG
GCATTGTGACGCTGATTCCGACCTACATCATGATGCTGAATTTCAACTGGATCAATTCGTATCACGCGCTGATCTGGCCG
GGTCTCAGCGGGGTCTTTGGTGTCTTTCTGCTGCGGCAGTTCTTCATGGGGATTCCCCGCGAACTGGAGGAAGCCGCGCG
GCTGGACGGCGCGAGCAGCCTGCAAATTCTGATACGGGTCATCCTGCCGCTGAGCATTCCCTCACTGGTGACGCTGGCCG
TCTTTGCCTTTATGGGGTCTTGGAACAACTTCCTGTGGCCGCTCTTTACGATCACTGACGTGGACAAGATGACGCTGCCA
GTCGGCATCACCACCTTCTCGCAGCGCTACGTGACCGAGTACGGCAAGCTGATGGCAGCCACCACGCTAGCGGCCGTTCC
GGCCCTGATCGCGTATCTGGTCGCGCAGCGCTTTCTCGAAGCGGGCCTCTCCACCACAGGCCTCAAGGAATGA

Upstream 100 bases:

>100_bases
CGAGCGCCGCTGCGATGGGCTTCGTGTTTGGCCTCCTCATGCTCGTGCTGACGGCTGCGCAGTTTCGCCTCATGGCGCGG
GACGTCAAGGAGGGCGGATC

Downstream 100 bases:

>100_bases
GCATGACAAAAGCCTTTCTCGCGCTGCCCCATCTGGCCCTGGCCTGCGTCCTTATGTCGCTGCTCACGCCCTCTGCCAGC
CTGGCCGGCGGAAGCAGCCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTDLAPTSSARPAPSRRRMPRDLPRFIVLCVLSVLFLAPIYWMIATSLKPEADTIATPVQWIPRTITFDNYREVLTSPDG
NILRWTWNSFLVAAIFTLLHVALCALTAYPLARMRFPGRDAWFWFILSSLMVPGIVTLIPTYIMMLNFNWINSYHALIWP
GLSGVFGVFLLRQFFMGIPRELEEAARLDGASSLQILIRVILPLSIPSLVTLAVFAFMGSWNNFLWPLFTITDVDKMTLP
VGITTFSQRYVTEYGKLMAATTLAAVPALIAYLVAQRFLEAGLSTTGLKE

Sequences:

>Translated_290_residues
MTDLAPTSSARPAPSRRRMPRDLPRFIVLCVLSVLFLAPIYWMIATSLKPEADTIATPVQWIPRTITFDNYREVLTSPDG
NILRWTWNSFLVAAIFTLLHVALCALTAYPLARMRFPGRDAWFWFILSSLMVPGIVTLIPTYIMMLNFNWINSYHALIWP
GLSGVFGVFLLRQFFMGIPRELEEAARLDGASSLQILIRVILPLSIPSLVTLAVFAFMGSWNNFLWPLFTITDVDKMTLP
VGITTFSQRYVTEYGKLMAATTLAAVPALIAYLVAQRFLEAGLSTTGLKE
>Mature_289_residues
TDLAPTSSARPAPSRRRMPRDLPRFIVLCVLSVLFLAPIYWMIATSLKPEADTIATPVQWIPRTITFDNYREVLTSPDGN
ILRWTWNSFLVAAIFTLLHVALCALTAYPLARMRFPGRDAWFWFILSSLMVPGIVTLIPTYIMMLNFNWINSYHALIWPG
LSGVFGVFLLRQFFMGIPRELEEAARLDGASSLQILIRVILPLSIPSLVTLAVFAFMGSWNNFLWPLFTITDVDKMTLPV
GITTFSQRYVTEYGKLMAATTLAAVPALIAYLVAQRFLEAGLSTTGLKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=263, Percent_Identity=34.2205323193916, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=29.9638989169675, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1790464, Length=246, Percent_Identity=32.520325203252, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32630; Mature: 32499

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLAPTSSARPAPSRRRMPRDLPRFIVLCVLSVLFLAPIYWMIATSLKPEADTIATPVQ
CCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHH
WIPRTITFDNYREVLTSPDGNILRWTWNSFLVAAIFTLLHVALCALTAYPLARMRFPGRD
HHCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AWFWFILSSLMVPGIVTLIPTYIMMLNFNWINSYHALIWPGLSGVFGVFLLRQFFMGIPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCH
ELEEAARLDGASSLQILIRVILPLSIPSLVTLAVFAFMGSWNNFLWPLFTITDVDKMTLP
HHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCC
VGITTFSQRYVTEYGKLMAATTLAAVPALIAYLVAQRFLEAGLSTTGLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDLAPTSSARPAPSRRRMPRDLPRFIVLCVLSVLFLAPIYWMIATSLKPEADTIATPVQ
CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHH
WIPRTITFDNYREVLTSPDGNILRWTWNSFLVAAIFTLLHVALCALTAYPLARMRFPGRD
HHCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AWFWFILSSLMVPGIVTLIPTYIMMLNFNWINSYHALIWPGLSGVFGVFLLRQFFMGIPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCH
ELEEAARLDGASSLQILIRVILPLSIPSLVTLAVFAFMGSWNNFLWPLFTITDVDKMTLP
HHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCC
VGITTFSQRYVTEYGKLMAATTLAAVPALIAYLVAQRFLEAGLSTTGLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]