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The map label for this gene is rpoT [C]

Identifier: 94312772

GI number: 94312772

Start: 388149

End: 389009

Strand: Direct

Name: rpoT [C]

Synonym: Rmet_3844

Alternate gene names: 94312772

Gene position: 388149-389009 (Clockwise)

Preceding gene: 94312771

Following gene: 94312773

Centisome position: 15.04

GC content: 65.62

Gene sequence:

>861_bases
ATGGTGGCGGACGCCGGTCTTTCGGAAGCCGCGGCGAGCTTCGAGCCATTGCGGCCCAAGCTGATCCGCGTCGCGTACCG
GATGCTCGGTTCGGTCGCGGATGCGGAGGACGTGGTGCAGGAAGCGTTCATCCGTTGGATGAACGCCGAGCGCGCCGAGG
TGCGTGTGCCCGAGGCGTTCCTGCGGCGCATGGTGATGCGGATGTGCCTCGACGAGCTGAAATCGGCGCGTCACCAGCGC
GAAACCTACATCGGTCCCTGGCTTCCCGACCCGGTCATCGAGGAAGAGGAGCAGGACGACGTCACGCTGCCGCTGATGCT
GGCGCTCGAACGCCTGTCGCCTCTCGAGCGCGCGGCGTTCCTGCTGCACGACGTGTTCGGCCTCGCGTTCGATGAGGTGG
CGGCGACGATCCAGCGCGAGCCGGCCGCGTGCCGGCAGCTTGCGGCGCGGGCGCGTGCCAATGTGAGGGAATCGCGCCCG
CGTTTTCAGGTCGAGAAGGAGCGGGGCCTGGCACTCGCAAAGGCATTCTTCGACGCCTCACGCAGCGGAGACATGGGCAC
GCTCAGCACGATGCTGGCGGCCGATGTGAGCCTGCATGCGGACGGCGGCGGCCAGCGCCCGGCGATTGGCCATCCGGTGT
TCGGCTTCGACGAGGTAATGCGTGTGCATGAACAACTGTCGAAATACTTCCAGAAGAATGGCTCGACCTTTGTCCGCGCG
GCTTTCATCAACGGGTTGCCGGGCATCGTCACGCGCGAATCCGACGGCGAACTGCAGACGACGGCGCTAGAGATCGAGGG
CGGCAAGATCGCGGCAATTTATGTGGTGCGCAACCCGGACAAGCTGCGGCATCTGCATTAA

Upstream 100 bases:

>100_bases
TCATGATCAACGTGATCAACGGCTGGAACCGGCTCGCGGTCGGATTCGGTCTCTGGGTCGATCCGGCGGCTGCCAAGGCC
GCGGCCAAGGCAGCCGCGTG

Downstream 100 bases:

>100_bases
CGGCCCGCGCAGTACCGTCTGTTATCGGCTGTTCACTTCGGAAACACGGGAAAGCGAACGCGTGAACCCTTGGGCATCGG
TGGTGGATGCAAGTTCGCTT

Product: RNA polymerase sigma factor SigJ

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF Sigma Factor; RNA Polymerase Sigma-70-Like Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MVADAGLSEAAASFEPLRPKLIRVAYRMLGSVADAEDVVQEAFIRWMNAERAEVRVPEAFLRRMVMRMCLDELKSARHQR
ETYIGPWLPDPVIEEEEQDDVTLPLMLALERLSPLERAAFLLHDVFGLAFDEVAATIQREPAACRQLAARARANVRESRP
RFQVEKERGLALAKAFFDASRSGDMGTLSTMLAADVSLHADGGGQRPAIGHPVFGFDEVMRVHEQLSKYFQKNGSTFVRA
AFINGLPGIVTRESDGELQTTALEIEGGKIAAIYVVRNPDKLRHLH

Sequences:

>Translated_286_residues
MVADAGLSEAAASFEPLRPKLIRVAYRMLGSVADAEDVVQEAFIRWMNAERAEVRVPEAFLRRMVMRMCLDELKSARHQR
ETYIGPWLPDPVIEEEEQDDVTLPLMLALERLSPLERAAFLLHDVFGLAFDEVAATIQREPAACRQLAARARANVRESRP
RFQVEKERGLALAKAFFDASRSGDMGTLSTMLAADVSLHADGGGQRPAIGHPVFGFDEVMRVHEQLSKYFQKNGSTFVRA
AFINGLPGIVTRESDGELQTTALEIEGGKIAAIYVVRNPDKLRHLH
>Mature_286_residues
MVADAGLSEAAASFEPLRPKLIRVAYRMLGSVADAEDVVQEAFIRWMNAERAEVRVPEAFLRRMVMRMCLDELKSARHQR
ETYIGPWLPDPVIEEEEQDDVTLPLMLALERLSPLERAAFLLHDVFGLAFDEVAATIQREPAACRQLAARARANVRESRP
RFQVEKERGLALAKAFFDASRSGDMGTLSTMLAADVSLHADGGGQRPAIGHPVFGFDEVMRVHEQLSKYFQKNGSTFVRA
AFINGLPGIVTRESDGELQTTALEIEGGKIAAIYVVRNPDKLRHLH

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31868; Mature: 31868

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVADAGLSEAAASFEPLRPKLIRVAYRMLGSVADAEDVVQEAFIRWMNAERAEVRVPEAF
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHEECCHHH
LRRMVMRMCLDELKSARHQRETYIGPWLPDPVIEEEEQDDVTLPLMLALERLSPLERAAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHH
LLHDVFGLAFDEVAATIQREPAACRQLAARARANVRESRPRFQVEKERGLALAKAFFDAS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC
RSGDMGTLSTMLAADVSLHADGGGQRPAIGHPVFGFDEVMRVHEQLSKYFQKNGSTFVRA
CCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH
AFINGLPGIVTRESDGELQTTALEIEGGKIAAIYVVRNPDKLRHLH
HHHCCCCCCEEECCCCCEEEEEEEECCCEEEEEEEEECCHHHCCCC
>Mature Secondary Structure
MVADAGLSEAAASFEPLRPKLIRVAYRMLGSVADAEDVVQEAFIRWMNAERAEVRVPEAF
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHEECCHHH
LRRMVMRMCLDELKSARHQRETYIGPWLPDPVIEEEEQDDVTLPLMLALERLSPLERAAF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHH
LLHDVFGLAFDEVAATIQREPAACRQLAARARANVRESRPRFQVEKERGLALAKAFFDAS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC
RSGDMGTLSTMLAADVSLHADGGGQRPAIGHPVFGFDEVMRVHEQLSKYFQKNGSTFVRA
CCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH
AFINGLPGIVTRESDGELQTTALEIEGGKIAAIYVVRNPDKLRHLH
HHHCCCCCCEEECCCCCEEEEEEEECCCEEEEEEEEECCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA