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The map label for this gene is yncB [H]

Identifier: 94310787

GI number: 94310787

Start: 2002900

End: 2003913

Strand: Reverse

Name: yncB [H]

Synonym: Rmet_1849

Alternate gene names: 94310787

Gene position: 2003913-2002900 (Counterclockwise)

Preceding gene: 94310788

Following gene: 94310786

Centisome position: 51.01

GC content: 62.43

Gene sequence:

>1014_bases
ATGTCGAAGCAAACGTACAAGCGCATCGTCCTGGCTTCGCGCCCGGAAGCAGCGGTCACCCCCGACAATTTCCGTATCGA
GGAACTGCCGGTCCCCGAACTGGCCGACGGCCAGGTGCTGGTGCGCAATCATTTCCTGTCGCTCGACCCGTACATGCGCG
GGCGCATGAGCGATAGCAAGTCGTATGCGGATCCGCAGCCGCTCAATGAAGTGATGATCGGCGGTACCGTCGGCGAGGTT
ATCGCCAGCAAGAATCCCAAGTGGAACGTCGGTGACAAGGTCATCGGCATGTTCGGCTGGCAGGAGCTTGGCGTGAGCGA
CGGCGGCATGATGCAGAAGGTCGACACCACGCACATTCCGTTGTCCGCCTATCTGGGTTCGGTGGGGATGCCCGGCGTGA
CGGCCTGGTATGGCCTGAACAAGATCATCGCGCCGAAGGCCGGCGAGACGGTTGTCGTCAGCGCGGCGTCCGGCGCGGTG
GGTAGCGTGGTGGGGCAGCTTGCCAAGCTGGCCGGCTGCTACGTGGTGGGCGTGGCCGGCGGCAAGGAAAAGTGCGACTA
CGTGGTCAACGAGCTTGGCTTCGATGCCTGCGTGGACTACAAGGCGGCCAAGGACGCGAAGGAACTGTACGCGATGGTCA
AGGCGGTCACGCCGAATGGCATCGATGGCTACTTCGAGAACGTTGGTGGAGACATCCTCGACGTCGTGCTGTCCCGCCTG
AACCCGTTCGCGCGCATCGCGGTTTGCGGTCTGATCGCTGGCTACGACGGCCAGGACATGCCGATTCGCAATCCGCGCGC
GATTCTGGTGGCGCGAGCGAAGATCGAGGGCTTTATCGTGTCCGAGCATATGGAACTCTGGCCGCAGGCACTGCGGGAAC
TGGGTACTTACGTCGCGCAGGGCAAGATCAAGTTCCGCGAGAGCATTGCCGAAGGTCTGGCCAGCGCACCCGAGGCATTC
ATCGGGCTGCTCAAGGGCAAGAACTTCGGCAAGCAGCTCGTGAAGCTGGCATAA

Upstream 100 bases:

>100_bases
CCCAAGCGGGAATCTGGCGCGGCCGATTCGGGCGCGGACGGCTGATCCCGTCGCGCCAGCGCAATACCTCTCTAACCTCA
AACGAGCGAAGGAACCGATC

Downstream 100 bases:

>100_bases
AGCCGCCTTCGACGCAGTACACCCCCGCAAATAGACAAATAGACAAAGAAAGCACAGGAGACAACCATGAATGCCCCGCA
AGCCAAGGATGAGATCGGCG

Product: putative oxidoreductase/alcolhol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSKQTYKRIVLASRPEAAVTPDNFRIEELPVPELADGQVLVRNHFLSLDPYMRGRMSDSKSYADPQPLNEVMIGGTVGEV
IASKNPKWNVGDKVIGMFGWQELGVSDGGMMQKVDTTHIPLSAYLGSVGMPGVTAWYGLNKIIAPKAGETVVVSAASGAV
GSVVGQLAKLAGCYVVGVAGGKEKCDYVVNELGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVGGDILDVVLSRL
NPFARIAVCGLIAGYDGQDMPIRNPRAILVARAKIEGFIVSEHMELWPQALRELGTYVAQGKIKFRESIAEGLASAPEAF
IGLLKGKNFGKQLVKLA

Sequences:

>Translated_337_residues
MSKQTYKRIVLASRPEAAVTPDNFRIEELPVPELADGQVLVRNHFLSLDPYMRGRMSDSKSYADPQPLNEVMIGGTVGEV
IASKNPKWNVGDKVIGMFGWQELGVSDGGMMQKVDTTHIPLSAYLGSVGMPGVTAWYGLNKIIAPKAGETVVVSAASGAV
GSVVGQLAKLAGCYVVGVAGGKEKCDYVVNELGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVGGDILDVVLSRL
NPFARIAVCGLIAGYDGQDMPIRNPRAILVARAKIEGFIVSEHMELWPQALRELGTYVAQGKIKFRESIAEGLASAPEAF
IGLLKGKNFGKQLVKLA
>Mature_336_residues
SKQTYKRIVLASRPEAAVTPDNFRIEELPVPELADGQVLVRNHFLSLDPYMRGRMSDSKSYADPQPLNEVMIGGTVGEVI
ASKNPKWNVGDKVIGMFGWQELGVSDGGMMQKVDTTHIPLSAYLGSVGMPGVTAWYGLNKIIAPKAGETVVVSAASGAVG
SVVGQLAKLAGCYVVGVAGGKEKCDYVVNELGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVGGDILDVVLSRLN
PFARIAVCGLIAGYDGQDMPIRNPRAILVARAKIEGFIVSEHMELWPQALRELGTYVAQGKIKFRESIAEGLASAPEAFI
GLLKGKNFGKQLVKLA

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=322, Percent_Identity=40.6832298136646, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI226059133, Length=322, Percent_Identity=40.6832298136646, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI226246682, Length=348, Percent_Identity=37.6436781609195, Blast_Score=212, Evalue=5e-55,
Organism=Homo sapiens, GI226246680, Length=348, Percent_Identity=37.6436781609195, Blast_Score=212, Evalue=5e-55,
Organism=Homo sapiens, GI22748929, Length=348, Percent_Identity=37.6436781609195, Blast_Score=212, Evalue=5e-55,
Organism=Homo sapiens, GI226056130, Length=240, Percent_Identity=42.5, Blast_Score=179, Evalue=2e-45,
Organism=Homo sapiens, GI28557745, Length=341, Percent_Identity=27.5659824046921, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI226510941, Length=343, Percent_Identity=47.5218658892128, Blast_Score=305, Evalue=3e-84,
Organism=Caenorhabditis elegans, GI133901710, Length=354, Percent_Identity=32.7683615819209, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI133901712, Length=354, Percent_Identity=32.7683615819209, Blast_Score=160, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6323504, Length=329, Percent_Identity=28.8753799392097, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36083; Mature: 35952

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQTYKRIVLASRPEAAVTPDNFRIEELPVPELADGQVLVRNHFLSLDPYMRGRMSDSK
CCCHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEHHCCCCCHHHHCCCCCCC
SYADPQPLNEVMIGGTVGEVIASKNPKWNVGDKVIGMFGWQELGVSDGGMMQKVDTTHIP
CCCCCCCHHHEEECCHHHHHHHCCCCCCCCCCHHHHHHCHHHHCCCCCCCEEECCCCCCC
LSAYLGSVGMPGVTAWYGLNKIIAPKAGETVVVSAASGAVGSVVGQLAKLAGCYVVGVAG
HHHHHCCCCCCCHHHHHCCCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECC
GKEKCDYVVNELGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVGGDILDVVLSRL
CCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHC
NPFARIAVCGLIAGYDGQDMPIRNPRAILVARAKIEGFIVSEHMELWPQALRELGTYVAQ
CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHCEEEEHHHHHHHHHHHHHHHHHHHC
GKIKFRESIAEGLASAPEAFIGLLKGKNFGKQLVKLA
CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
SKQTYKRIVLASRPEAAVTPDNFRIEELPVPELADGQVLVRNHFLSLDPYMRGRMSDSK
CCHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEHHCCCCCHHHHCCCCCCC
SYADPQPLNEVMIGGTVGEVIASKNPKWNVGDKVIGMFGWQELGVSDGGMMQKVDTTHIP
CCCCCCCHHHEEECCHHHHHHHCCCCCCCCCCHHHHHHCHHHHCCCCCCCEEECCCCCCC
LSAYLGSVGMPGVTAWYGLNKIIAPKAGETVVVSAASGAVGSVVGQLAKLAGCYVVGVAG
HHHHHCCCCCCCHHHHHCCCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECC
GKEKCDYVVNELGFDACVDYKAAKDAKELYAMVKAVTPNGIDGYFENVGGDILDVVLSRL
CCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHC
NPFARIAVCGLIAGYDGQDMPIRNPRAILVARAKIEGFIVSEHMELWPQALRELGTYVAQ
CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHCEEEEHHHHHHHHHHHHHHHHHHHC
GKIKFRESIAEGLASAPEAFIGLLKGKNFGKQLVKLA
CHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]