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The map label for this gene is ybgC [H]

Identifier: 94310779

GI number: 94310779

Start: 1995729

End: 1996166

Strand: Reverse

Name: ybgC [H]

Synonym: Rmet_1841

Alternate gene names: 94310779

Gene position: 1996166-1995729 (Counterclockwise)

Preceding gene: 94310780

Following gene: 94310771

Centisome position: 50.82

GC content: 61.64

Gene sequence:

>438_bases
ATGGCCAAAGAGGATTTTCATCTCAGCATGCCGCTGCGCGTGCGCTGGGCCGAGGTCGATCCGCAATCGATCGTCTTCAA
TGCCCACTATCTGACTTACTGCGATATCTGCTCGACCGAGTACTGGCGCGCGATTGGCGTGCGCTATCCGGAGGACTTGC
TGCGCGCCCATGGCGTGGACATCTTCGTGATCAAGTCCACGCTGGAGTACCACGCATCGGCACGGTTTGACGAGATGCTC
GATATTCGCGGCCGCATGGCGCGGCTGGGCCGGTCGAGCATGGTGTTCCGCGTGGAAATGTATCGCGGCGACGAGCACCT
GATCACCGGGGAGGTGGTCTACGTCTGCGCCGATCCGAAGACGCAGAAATCGGCGCCGATCCCGGCATCGGTGCGGGAGC
GGATCGAAGCGTGGGAGATTGTGAAGCCTGCTGCGTGA

Upstream 100 bases:

>100_bases
CGCGATCATCGAGAAACTGGGCCTGGGCAAGGGTCAGTAAGGTACGTAGAACACGGGCGTCCCACGGGGCGCCCGTTTTT
TCATTGGAGCTTCGCCCCCC

Downstream 100 bases:

>100_bases
GTTGGGATGATGTTTGATGTGCTTGCCCTCTCCCGCGAGCGGCAGAGGGCAAGCCTGTCAATCCTGTCAACCGCGACCTC
ACCGGATCAGAGCTTGACCG

Product: 4-hydroxybenzoyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAKEDFHLSMPLRVRWAEVDPQSIVFNAHYLTYCDICSTEYWRAIGVRYPEDLLRAHGVDIFVIKSTLEYHASARFDEML
DIRGRMARLGRSSMVFRVEMYRGDEHLITGEVVYVCADPKTQKSAPIPASVRERIEAWEIVKPAA

Sequences:

>Translated_145_residues
MAKEDFHLSMPLRVRWAEVDPQSIVFNAHYLTYCDICSTEYWRAIGVRYPEDLLRAHGVDIFVIKSTLEYHASARFDEML
DIRGRMARLGRSSMVFRVEMYRGDEHLITGEVVYVCADPKTQKSAPIPASVRERIEAWEIVKPAA
>Mature_144_residues
AKEDFHLSMPLRVRWAEVDPQSIVFNAHYLTYCDICSTEYWRAIGVRYPEDLLRAHGVDIFVIKSTLEYHASARFDEMLD
IRGRMARLGRSSMVFRVEMYRGDEHLITGEVVYVCADPKTQKSAPIPASVRERIEAWEIVKPAA

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=122, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16765; Mature: 16634

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEDFHLSMPLRVRWAEVDPQSIVFNAHYLTYCDICSTEYWRAIGVRYPEDLLRAHGVD
CCCCCEEEECCEEEEEEECCCCCEEEECEEEEEECCCCCHHHHHHCCCCCHHHHHHCCCE
IFVIKSTLEYHASARFDEMLDIRGRMARLGRSSMVFRVEMYRGDEHLITGEVVYVCADPK
EEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEECEEEEEECCCC
TQKSAPIPASVRERIEAWEIVKPAA
CCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKEDFHLSMPLRVRWAEVDPQSIVFNAHYLTYCDICSTEYWRAIGVRYPEDLLRAHGVD
CCCCEEEECCEEEEEEECCCCCEEEECEEEEEECCCCCHHHHHHCCCCCHHHHHHCCCE
IFVIKSTLEYHASARFDEMLDIRGRMARLGRSSMVFRVEMYRGDEHLITGEVVYVCADPK
EEEEECCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEECEEEEEECCCC
TQKSAPIPASVRERIEAWEIVKPAA
CCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]