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The map label for this gene is virD2

Identifier: 94310203

GI number: 94310203

Start: 1379309

End: 1381414

Strand: Direct

Name: virD2

Synonym: Rmet_1259

Alternate gene names: NA

Gene position: 1379309-1381414 (Clockwise)

Preceding gene: 94310202

Following gene: 94310215

Centisome position: 35.11

GC content: 69.18

Gene sequence:

>2106_bases
GTGGCGCAGCACGCAGCGGCTTCGCCGCCGTGCCGCTTGTGGCGCGAGGCCCGCGCCAATGCAGGCATGTCCGCGTGCTT
TGCACGACCGGACACGCCAGAGGTTGCAGAGGGCATAACCATGACCGACCGCCGCGATGATGATTTCCGCATCCGCCCCA
GCGCCCCGAAGAACCGAGGCCAGGGCTTCGTCTCCAAGGTGCTCAAGCAGGCGGGCAAGGCCAGCGGCGGCAAGTCCTCG
GTGCGCCGTCCTGGGACGACTGGCGGCACCGGGAGGGGCACCGTCCAGCGGCCCGGCTCGCGCCTGGGTCGCGGCCACAC
GGCGGCGCGCTTCGCGGGGGCGAAGCTCACGCCCATGTCGCGGCGCGTGACCATCAAGACGCTGCTGGTCAACCAGCGCC
AGGCCAGTCCGCAGTCGCTCGCCAAGCACCTGCGCTACATCGAGCGCGATGGCGTGGGCCGCGATGGCGAGCCGGGCCAA
GCCTACGGGCCGCAGACCGATGCTGCCGACCTCGACGGCTTCAAGGAACGCTGCGCGGATGACCGGCACCACTTCCGCTT
CATCCTCTCGCCCGAGGATGGCGCGGAACTCGAAGACCTGCGCACCTACACGCGGCATCTCATGGGCCGCATGGAGGCCG
ACTTGGGCACGGGCCTCGATTGGGTGGCCGTGAACCACTGGAACACCGACAACCCGCACACGCACATCGTCGTGCGCGGG
CGCGACGACACCGGCAAAGACCTCATCATCGCGGGCGACTACATCACCGATGGTTTCCGCCATCGCGCCGCCGAACTGGC
AACCGAATGGCTGGGGCCGCGCACCGAGCTGGAGATCAAGCAGACCTTGCAGCGCGAGGTGGAACAGGAGCGGTGGACGA
GCCTCGACCGCACCCTCCAACGCGAGGCCGGCGAGGACGGCCGGGTGCAGACCGAACGCTTCAACGAACCGATGCTGCAA
CGCCAGCGCCTGCCGCTGATCGGCCGCCTGCAACGCTTGCAGCGCCTGGGCCTGGCCGACGAGCTGCGGCCGGGCACCTG
GGTCGTCCATGCCGACGCGGAGAAGACCCTGCGCGCCCTGGGCGAGCGTGGCGACATCATCCGCACCATGCAGCGAGCCA
TGCGCGGCCAGCCGCGCGAGCTGGCGGTGTTCGAGCCGGGCGACGACGACCGCACCATTCTCGGCCGCGTGGCCGCGAAG
GGGCTGGCCGACGAGCTGCGCGACCGGGGCTACCTGGTCATCGACGGCGTGGACGGCAAGGCCCACTACGTCGCGCTCAA
CGCCCGCGACGAGCTGGCGAACTATCCGACCGGCGCCGTGGTGGAGGTCAAGGGTTCGGCCGACGTGCGCGCGGCCGACA
AGAACATCGCTGCACTGGCGAGCGATGGCCTGTATCGCACCGATCATCACCTGGCGATTGAGCAAGGCCGGGCCACGCAT
GGGCGCGATCCGCAGGAAATCGTCGCGGCTCACGTTCGCCGCCTTGAAGCCCTGCGCCGGGCCGGCATCGTGGAGCGCGT
GGCCGAAGGTTTGTGGAAGGTGCCGGGCGACCTGCCCGAGCAGGGCCGCCGCTACGACGCGCAGCGCCTGGGCGGCGTGG
CGGTGGAACTGAAATCGCACCTGCCTATCGAGCGGCAGGCCCGCGTGATGGGGGCCACCTGGCTCGACCACCAACTGATC
GGCGGCGGCTCGGGCCTTGGCAACCTGGGCTTTGGCAGCGAGGCCAAACAAGCGATGCAGCAGCGCGCCGACTTCCTGGC
CGAACAGGGGCTGGCCGAGCGCCGTGGGCAGCGCGTAATCCTGGCCCGGAACCTGTTGGGCACGCTGCGCAATCGGGAAT
TGGCGCAGGCCGCCAAGGACATTGCGGCCGAAACCGGCTTGGAGCACCGGCCCGTGTCCGACGGCCAACGCGTGGCTGGC
ATCTACAGGCGTTCCGTCATGCTCGCTAGCGGGCGCTACGCGATGCTCGATGACGGCATGGGGTTCAGCCTGGTGCCGTG
GAAGCCGGTGATCGAGCAGCGGTTGGGACAGCAACTCGCTGCGACCATTCACAAAGGATCGGCTTCCTGGGAACTCGGAA
TTCGTCGAGGTATATCGATTGGATAG

Upstream 100 bases:

>100_bases
CGGGCCGCCGCTGCCCGGAGCGCCAGCGAGGGGCAAAGGCGGAAGGCAAGACAAAAGGACGCGGCACCGGGCCGCGTCGA
AAGCCAGTCTGCACGTGGGG

Downstream 100 bases:

>100_bases
AAGTTAGTCTTCCGTCAACAGGTGTAGCCATCCCTTGCTAGCGGCTTCCATAGAACTTTTCCACGAACGAGCGACGGTAA
CTCTGGTGGCAGGCTAGGCA

Product: relaxase type IV secretory pathway VirD2

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 701; Mature: 700

Protein sequence:

>701_residues
MAQHAAASPPCRLWREARANAGMSACFARPDTPEVAEGITMTDRRDDDFRIRPSAPKNRGQGFVSKVLKQAGKASGGKSS
VRRPGTTGGTGRGTVQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQRQASPQSLAKHLRYIERDGVGRDGEPGQ
AYGPQTDAADLDGFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRG
RDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIKQTLQREVEQERWTSLDRTLQREAGEDGRVQTERFNEPMLQ
RQRLPLIGRLQRLQRLGLADELRPGTWVVHADAEKTLRALGERGDIIRTMQRAMRGQPRELAVFEPGDDDRTILGRVAAK
GLADELRDRGYLVIDGVDGKAHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIEQGRATH
GRDPQEIVAAHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSHLPIERQARVMGATWLDHQLI
GGGSGLGNLGFGSEAKQAMQQRADFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAAETGLEHRPVSDGQRVAG
IYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLAATIHKGSASWELGIRRGISIG

Sequences:

>Translated_701_residues
MAQHAAASPPCRLWREARANAGMSACFARPDTPEVAEGITMTDRRDDDFRIRPSAPKNRGQGFVSKVLKQAGKASGGKSS
VRRPGTTGGTGRGTVQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQRQASPQSLAKHLRYIERDGVGRDGEPGQ
AYGPQTDAADLDGFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRG
RDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIKQTLQREVEQERWTSLDRTLQREAGEDGRVQTERFNEPMLQ
RQRLPLIGRLQRLQRLGLADELRPGTWVVHADAEKTLRALGERGDIIRTMQRAMRGQPRELAVFEPGDDDRTILGRVAAK
GLADELRDRGYLVIDGVDGKAHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIEQGRATH
GRDPQEIVAAHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSHLPIERQARVMGATWLDHQLI
GGGSGLGNLGFGSEAKQAMQQRADFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAAETGLEHRPVSDGQRVAG
IYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLAATIHKGSASWELGIRRGISIG
>Mature_700_residues
AQHAAASPPCRLWREARANAGMSACFARPDTPEVAEGITMTDRRDDDFRIRPSAPKNRGQGFVSKVLKQAGKASGGKSSV
RRPGTTGGTGRGTVQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQRQASPQSLAKHLRYIERDGVGRDGEPGQA
YGPQTDAADLDGFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRGR
DDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIKQTLQREVEQERWTSLDRTLQREAGEDGRVQTERFNEPMLQR
QRLPLIGRLQRLQRLGLADELRPGTWVVHADAEKTLRALGERGDIIRTMQRAMRGQPRELAVFEPGDDDRTILGRVAAKG
LADELRDRGYLVIDGVDGKAHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIEQGRATHG
RDPQEIVAAHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSHLPIERQARVMGATWLDHQLIG
GGSGLGNLGFGSEAKQAMQQRADFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAAETGLEHRPVSDGQRVAGI
YRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLAATIHKGSASWELGIRRGISIG

Specific function: Unknown

COG id: COG3843

COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77336; Mature: 77204

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQHAAASPPCRLWREARANAGMSACFARPDTPEVAEGITMTDRRDDDFRIRPSAPKNRG
CCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCC
QGFVSKVLKQAGKASGGKSSVRRPGTTGGTGRGTVQRPGSRLGRGHTAARFAGAKLTPMS
CHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCC
RRVTIKTLLVNQRQASPQSLAKHLRYIERDGVGRDGEPGQAYGPQTDAADLDGFKERCAD
CCEEEEHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
DRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRG
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEC
RDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIKQTLQREVEQERWTSLDRTLQ
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
REAGEDGRVQTERFNEPMLQRQRLPLIGRLQRLQRLGLADELRPGTWVVHADAEKTLRAL
HHCCCCCCEEHHHCCCHHHHHHCCCHHHHHHHHHHCCCHHHCCCCEEEEECCHHHHHHHH
GERGDIIRTMQRAMRGQPRELAVFEPGDDDRTILGRVAAKGLADELRDRGYLVIDGVDGK
HCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
AHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIEQGRATH
EEEEEEECHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCC
GRDPQEIVAAHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEHHHC
LPIERQARVMGATWLDHQLIGGGSGLGNLGFGSEAKQAMQQRADFLAEQGLAERRGQRVI
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCEEE
LARNLLGTLRNRELAQAAKDIAAETGLEHRPVSDGQRVAGIYRRSVMLASGRYAMLDDGM
EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEECCC
GFSLVPWKPVIEQRLGQQLAATIHKGSASWELGIRRGISIG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCC
>Mature Secondary Structure 
AQHAAASPPCRLWREARANAGMSACFARPDTPEVAEGITMTDRRDDDFRIRPSAPKNRG
CCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCC
QGFVSKVLKQAGKASGGKSSVRRPGTTGGTGRGTVQRPGSRLGRGHTAARFAGAKLTPMS
CHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCC
RRVTIKTLLVNQRQASPQSLAKHLRYIERDGVGRDGEPGQAYGPQTDAADLDGFKERCAD
CCEEEEHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
DRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWVAVNHWNTDNPHTHIVVRG
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEC
RDDTGKDLIIAGDYITDGFRHRAAELATEWLGPRTELEIKQTLQREVEQERWTSLDRTLQ
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
REAGEDGRVQTERFNEPMLQRQRLPLIGRLQRLQRLGLADELRPGTWVVHADAEKTLRAL
HHCCCCCCEEHHHCCCHHHHHHCCCHHHHHHHHHHCCCHHHCCCCEEEEECCHHHHHHHH
GERGDIIRTMQRAMRGQPRELAVFEPGDDDRTILGRVAAKGLADELRDRGYLVIDGVDGK
HCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
AHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAALASDGLYRTDHHLAIEQGRATH
EEEEEEECHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCC
GRDPQEIVAAHVRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRLGGVAVELKSH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEHHHC
LPIERQARVMGATWLDHQLIGGGSGLGNLGFGSEAKQAMQQRADFLAEQGLAERRGQRVI
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCEEE
LARNLLGTLRNRELAQAAKDIAAETGLEHRPVSDGQRVAGIYRRSVMLASGRYAMLDDGM
EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEECCC
GFSLVPWKPVIEQRLGQQLAATIHKGSASWELGIRRGISIG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA