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The map label for this gene is yocS [H]

Identifier: 93006964

GI number: 93006964

Start: 2623466

End: 2624389

Strand: Reverse

Name: yocS [H]

Synonym: Pcryo_2140

Alternate gene names: 93006964

Gene position: 2624389-2623466 (Counterclockwise)

Preceding gene: 93006965

Following gene: 93006962

Centisome position: 85.77

GC content: 42.64

Gene sequence:

>924_bases
ATGGAAAGTCTGGCTCTAGTCACCTTAGTAAATAGCGTTGTTATTCCTATTTGCTTGTTTTTAATCATGATGGGTATGGG
TTTGACCCTTATTACCAATGATTTTAAACGGGTATTAAAATACCCAAAAGCCGTTGGTATTGGCTTGACCAATCAGCTGA
TACTGTTGCCAATTATTGGCTTTGCCCTAGCTAATATCATGCCATTACGCCCAGAATACGCCGTCGGAGTTATGCTCCTC
GTTCTGTGTCCGGGCGGCACTACCTCAAACTTATTTACCTATTTGGCTAAAGGCGATGTGGCGCTGTCGGTGACGATGAC
AGCGATTGCCAGCGTTATTACGGTATTTACCATTCCCATTGTACTGAGTTTTTCATTGATTTATTTTATGGGCAGCGGTA
GTGAGTTTGAATTGCCGGTAGTAAAAACCGTGCTTACCTTAGTGGTACTGACGATTGTACCTATTAGCATTGGGATGCTG
ATTAAACGCTACGCACCAAAAGTCGCCGATCGCTCACAAGTCTATGTATCTCGATTTGGGGTGATATTTTTAACGTTTTT
AGTGCTGTTTTTGTGTTATGTGCAACGCGATATCATTGTCGATGCCTTTATCGCTACTGGCCCTGTATCGGTATTGTTGA
ACCTCTCGACCATGGCGCTCGGTTATTATAGTAGCAAATGGTTCGGTCTTAACTTAGCGCAAAGAACTTCGGTGACGCTA
GAAGTCGGTCTACAAAACAGTACCTTGTCGATATTTATGGCATTAACGCTATTATCTAACTACGATATGTCGATGATGCC
AGCTATTTATACCTTGGTAATGTTCCTAACGGCAGGCATTTTGGTGCGTATATTTAGCGCTCGGCACAATAAGTTAAGAA
AGTCTGAGATAGAAAGTAGTGTGTTGGCAGCGCGTATGCTGTAA

Upstream 100 bases:

>100_bases
AGCAGGTAGTGACAAGCGTATTAGCAAGGATTGCTAATCAGGCATCATTGAATCATTATAAATTGACCTAGCAATAGGTC
TTATCTACAGGGATGTAGTT

Downstream 100 bases:

>100_bases
ATAGGGATGAGTTATTTGTATAATTACTCAGGCATAATTGCTCGATTATAATTTTTTAGTTATAAAGCTGCATAACCACT
TTCGATATAGTCAGTGCTAA

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MESLALVTLVNSVVIPICLFLIMMGMGLTLITNDFKRVLKYPKAVGIGLTNQLILLPIIGFALANIMPLRPEYAVGVMLL
VLCPGGTTSNLFTYLAKGDVALSVTMTAIASVITVFTIPIVLSFSLIYFMGSGSEFELPVVKTVLTLVVLTIVPISIGML
IKRYAPKVADRSQVYVSRFGVIFLTFLVLFLCYVQRDIIVDAFIATGPVSVLLNLSTMALGYYSSKWFGLNLAQRTSVTL
EVGLQNSTLSIFMALTLLSNYDMSMMPAIYTLVMFLTAGILVRIFSARHNKLRKSEIESSVLAARML

Sequences:

>Translated_307_residues
MESLALVTLVNSVVIPICLFLIMMGMGLTLITNDFKRVLKYPKAVGIGLTNQLILLPIIGFALANIMPLRPEYAVGVMLL
VLCPGGTTSNLFTYLAKGDVALSVTMTAIASVITVFTIPIVLSFSLIYFMGSGSEFELPVVKTVLTLVVLTIVPISIGML
IKRYAPKVADRSQVYVSRFGVIFLTFLVLFLCYVQRDIIVDAFIATGPVSVLLNLSTMALGYYSSKWFGLNLAQRTSVTL
EVGLQNSTLSIFMALTLLSNYDMSMMPAIYTLVMFLTAGILVRIFSARHNKLRKSEIESSVLAARML
>Mature_307_residues
MESLALVTLVNSVVIPICLFLIMMGMGLTLITNDFKRVLKYPKAVGIGLTNQLILLPIIGFALANIMPLRPEYAVGVMLL
VLCPGGTTSNLFTYLAKGDVALSVTMTAIASVITVFTIPIVLSFSLIYFMGSGSEFELPVVKTVLTLVVLTIVPISIGML
IKRYAPKVADRSQVYVSRFGVIFLTFLVLFLCYVQRDIIVDAFIATGPVSVLLNLSTMALGYYSSKWFGLNLAQRTSVTL
EVGLQNSTLSIFMALTLLSNYDMSMMPAIYTLVMFLTAGILVRIFSARHNKLRKSEIESSVLAARML

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=304, Percent_Identity=26.9736842105263, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4506971, Length=251, Percent_Identity=28.6852589641434, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI37537552, Length=170, Percent_Identity=28.2352941176471, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI58219066, Length=230, Percent_Identity=33.0434782608696, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=28.5087719298246, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI24308414, Length=314, Percent_Identity=28.343949044586, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33581; Mature: 33581

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLALVTLVNSVVIPICLFLIMMGMGLTLITNDFKRVLKYPKAVGIGLTNQLILLPIIG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHH
FALANIMPLRPEYAVGVMLLVLCPGGTTSNLFTYLAKGDVALSVTMTAIASVITVFTIPI
HHHHHCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
VLSFSLIYFMGSGSEFELPVVKTVLTLVVLTIVPISIGMLIKRYAPKVADRSQVYVSRFG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VIFLTFLVLFLCYVQRDIIVDAFIATGPVSVLLNLSTMALGYYSSKWFGLNLAQRTSVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCEEEE
EVGLQNSTLSIFMALTLLSNYDMSMMPAIYTLVMFLTAGILVRIFSARHNKLRKSEIESS
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAARML
HHHHHCC
>Mature Secondary Structure
MESLALVTLVNSVVIPICLFLIMMGMGLTLITNDFKRVLKYPKAVGIGLTNQLILLPIIG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHH
FALANIMPLRPEYAVGVMLLVLCPGGTTSNLFTYLAKGDVALSVTMTAIASVITVFTIPI
HHHHHCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
VLSFSLIYFMGSGSEFELPVVKTVLTLVVLTIVPISIGMLIKRYAPKVADRSQVYVSRFG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VIFLTFLVLFLCYVQRDIIVDAFIATGPVSVLLNLSTMALGYYSSKWFGLNLAQRTSVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCEEEE
EVGLQNSTLSIFMALTLLSNYDMSMMPAIYTLVMFLTAGILVRIFSARHNKLRKSEIESS
EECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAARML
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]