Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
---|---|
Accession | NC_007969 |
Length | 3,059,876 |
Click here to switch to the map view.
The map label for this gene is 93006648
Identifier: 93006648
GI number: 93006648
Start: 2252054
End: 2253343
Strand: Direct
Name: 93006648
Synonym: Pcryo_1824
Alternate gene names: NA
Gene position: 2252054-2253343 (Clockwise)
Preceding gene: 93006646
Following gene: 93006649
Centisome position: 73.6
GC content: 39.84
Gene sequence:
>1290_bases GTGACTCTTTATATTCTAGCCGCCATCGTGATATGTATCATTTTGGGCTATACCACTAAGATTAATATTGGCCTATTTGC TATTGCATTTTCATATCTAATCGGTTGTTTCGGTATGGGGATGAAGGCACATGAAATTGTTGAGCTATGGCCTCTCAAAA TTTTCTTTGTTATTTTTGCGGTGACTCTTTTCTATAACTTTCCCCTAGCTAACGGTGCTTTAGAAAAGCTATCCAATCAT TTAATCTATAAGTGCCGTCACTTTCCCGCATTCCTACCTTTAGTCATTTTCCTTGTGGCCACGATTATTGCAGGCTTAGG GGCTGGTTATTATACGGTCTTAGCAACGATGGCACCGATGATCCTGCTATTGTCTAAACGCACTAACTTGAATCTTGTCA TTGCTACTTTATCAGTGAACTATGGTGCCTTAGCGGGTGCTAACTTTATCACCTCACAAAGCGGTGTTATTTTTAGAGAG CTGATGCGCGGCGCAGGCGTCGCAAATGATAATACTTTTACTTATGTGTTAGGGATATTCGCTGTCACTTTTATAATGCC TATGATTGTATTGGGTGCTTATAGCTTTATCAATGCCAAAAACAGCAAAATCGCGATTCAGACGACCATACCAGAACCCT TTGATAGTAAACAAAAACAGTCTCTTATACTGATTTTTATTATGATGGCTATTGTACTTATCGTGCCCATTTTAAATCTA CTCATGCCACAAGTATCAGCGATTCAGTTTTTGAACGCTCGGATTGACATTGGTTTTATCGCTATATTTTTTGCTTTAGT GAGCTTATTTTTAAAATTAGGCGATGAAAAAGCAGTGATTGCTTTAATACCTTGGAATACCCTCATTATGATTTGTGGTG TTGGTATGTTAATCAGCCTCGGAGTAGAAATAGGTGTTATTTACGAGCTGACAGAATGGCTAAGTACCAATGTACCCATC TGGATGATACCGATTTTAGTCTTTGTGATTAGCGCCATTATGTCGATATTTGCTAGTACGCTCGGGGTAGTCGCCCCTAC CTTATTCCCTATGGTCCTTCCCCTAGCCGTTGCCTCTGGACTAAGCCCTTTATTACTATTTACCTGTATTGTTGTGGGGG CGCAAAGCTCATCACTCTCGCCTTTCTCATCAGGAGGTAGTCTGATGTTAGGCGCTTCTCAAGTCGTTATAAACAAAGAC AAGCTTTTTAATGCGCTACTATTCAAGGCAGTGCCCTTAGATATTGGTATTGGAATACTCGCAATTTTACTTATCCAGCT GATATTTTAA
Upstream 100 bases:
>100_bases TCCAGAAAACCCTGTGTCAATATTAGCGTAATACTCTTTACTCTGTAAAAACTGCTATGGTTTTTTATAGAATTCATACA GTTAAGGTCAAGGAGTAGTC
Downstream 100 bases:
>100_bases CTTCTCATAGGTAAAATATACCGTGATTTTTTAAAAATTTTACACCTGCTTGCTATATTTTTGCTCCCAAAATATCTATT TTTCTCACTAAATTCATAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Dicarboxylate Carrier MatC Domain Protein; Dicarboxylate Carrier Protein; Integral Membrane Protein; Carrier Protein; Gram-Positive Signal Peptide YSIRK Family; Di- And Tricarboxylate Transporter; Dicarboxylate Carrier Protein MatC; Dicarboxylate-Carrier Protein; Membrane Associated Dicarboxylate Carrier Protein
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MTLYILAAIVICIILGYTTKINIGLFAIAFSYLIGCFGMGMKAHEIVELWPLKIFFVIFAVTLFYNFPLANGALEKLSNH LIYKCRHFPAFLPLVIFLVATIIAGLGAGYYTVLATMAPMILLLSKRTNLNLVIATLSVNYGALAGANFITSQSGVIFRE LMRGAGVANDNTFTYVLGIFAVTFIMPMIVLGAYSFINAKNSKIAIQTTIPEPFDSKQKQSLILIFIMMAIVLIVPILNL LMPQVSAIQFLNARIDIGFIAIFFALVSLFLKLGDEKAVIALIPWNTLIMICGVGMLISLGVEIGVIYELTEWLSTNVPI WMIPILVFVISAIMSIFASTLGVVAPTLFPMVLPLAVASGLSPLLLFTCIVVGAQSSSLSPFSSGGSLMLGASQVVINKD KLFNALLFKAVPLDIGIGILAILLIQLIF
Sequences:
>Translated_429_residues MTLYILAAIVICIILGYTTKINIGLFAIAFSYLIGCFGMGMKAHEIVELWPLKIFFVIFAVTLFYNFPLANGALEKLSNH LIYKCRHFPAFLPLVIFLVATIIAGLGAGYYTVLATMAPMILLLSKRTNLNLVIATLSVNYGALAGANFITSQSGVIFRE LMRGAGVANDNTFTYVLGIFAVTFIMPMIVLGAYSFINAKNSKIAIQTTIPEPFDSKQKQSLILIFIMMAIVLIVPILNL LMPQVSAIQFLNARIDIGFIAIFFALVSLFLKLGDEKAVIALIPWNTLIMICGVGMLISLGVEIGVIYELTEWLSTNVPI WMIPILVFVISAIMSIFASTLGVVAPTLFPMVLPLAVASGLSPLLLFTCIVVGAQSSSLSPFSSGGSLMLGASQVVINKD KLFNALLFKAVPLDIGIGILAILLIQLIF >Mature_428_residues TLYILAAIVICIILGYTTKINIGLFAIAFSYLIGCFGMGMKAHEIVELWPLKIFFVIFAVTLFYNFPLANGALEKLSNHL IYKCRHFPAFLPLVIFLVATIIAGLGAGYYTVLATMAPMILLLSKRTNLNLVIATLSVNYGALAGANFITSQSGVIFREL MRGAGVANDNTFTYVLGIFAVTFIMPMIVLGAYSFINAKNSKIAIQTTIPEPFDSKQKQSLILIFIMMAIVLIVPILNLL MPQVSAIQFLNARIDIGFIAIFFALVSLFLKLGDEKAVIALIPWNTLIMICGVGMLISLGVEIGVIYELTEWLSTNVPIW MIPILVFVISAIMSIFASTLGVVAPTLFPMVLPLAVASGLSPLLLFTCIVVGAQSSSLSPFSSGGSLMLGASQVVINKDK LFNALLFKAVPLDIGIGILAILLIQLIF
Specific function: Unknown
COG id: COG0471
COG function: function code P; Di- and tricarboxylate transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46423; Mature: 46292
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLYILAAIVICIILGYTTKINIGLFAIAFSYLIGCFGMGMKAHEIVELWPLKIFFVIFA CHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH VTLFYNFPLANGALEKLSNHLIYKCRHFPAFLPLVIFLVATIIAGLGAGYYTVLATMAPM HHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ILLLSKRTNLNLVIATLSVNYGALAGANFITSQSGVIFRELMRGAGVANDNTFTYVLGIF HHHHHCCCCCEEEEEEEECCCCHHHCCCHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH AVTFIMPMIVLGAYSFINAKNSKIAIQTTIPEPFDSKQKQSLILIFIMMAIVLIVPILNL HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LMPQVSAIQFLNARIDIGFIAIFFALVSLFLKLGDEKAVIALIPWNTLIMICGVGMLISL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH GVEIGVIYELTEWLSTNVPIWMIPILVFVISAIMSIFASTLGVVAPTLFPMVLPLAVASG CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSPLLLFTCIVVGAQSSSLSPFSSGGSLMLGASQVVINKDKLFNALLFKAVPLDIGIGIL CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHEECHHHHHHHHHHHHHHHHHHHHHH AILLIQLIF HHHHHHHHC >Mature Secondary Structure TLYILAAIVICIILGYTTKINIGLFAIAFSYLIGCFGMGMKAHEIVELWPLKIFFVIFA HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH VTLFYNFPLANGALEKLSNHLIYKCRHFPAFLPLVIFLVATIIAGLGAGYYTVLATMAPM HHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH ILLLSKRTNLNLVIATLSVNYGALAGANFITSQSGVIFRELMRGAGVANDNTFTYVLGIF HHHHHCCCCCEEEEEEEECCCCHHHCCCHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH AVTFIMPMIVLGAYSFINAKNSKIAIQTTIPEPFDSKQKQSLILIFIMMAIVLIVPILNL HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LMPQVSAIQFLNARIDIGFIAIFFALVSLFLKLGDEKAVIALIPWNTLIMICGVGMLISL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH GVEIGVIYELTEWLSTNVPIWMIPILVFVISAIMSIFASTLGVVAPTLFPMVLPLAVASG CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LSPLLLFTCIVVGAQSSSLSPFSSGGSLMLGASQVVINKDKLFNALLFKAVPLDIGIGIL CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHEECHHHHHHHHHHHHHHHHHHHHHH AILLIQLIF HHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA