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The map label for this gene is asnC [C]

Identifier: 93006620

GI number: 93006620

Start: 2220788

End: 2221219

Strand: Direct

Name: asnC [C]

Synonym: Pcryo_1796

Alternate gene names: 93006620

Gene position: 2220788-2221219 (Clockwise)

Preceding gene: 93006613

Following gene: 93006621

Centisome position: 72.58

GC content: 43.06

Gene sequence:

>432_bases
ATGGCGTATTACACTTATGACTCTTTAGATAGCGAACTGATATCTGAGCTGCGACAAGATGGTCGAGCAACCATCTCAAA
CCTTGCTAAAAAACTCAAAGTTTCTCGTGCCACTGTCCAAAACAGATTGGATAGACTGATTCATAACGGCGCTATTTTAG
GATTCACGATTCGAGTGCATGAAGCACTAGATAAAGAAACCGTCAAAGCGATGATGATGATTGAAGTGACAGGAAAGTCT
ACGTCACAAGTGATTAGGAAACTGCGGGGTATCCCGCAACTGATTAAGCTACATACAACCAATGGGGCGTGGGACTTGGT
CGCAGAGATACACACTACAAGCTTGAGAGAATTTGATGAAGTGCTGCGTCAAGTAAGAGAAATTGACGGCATTCTGAATA
GCGAAACCAGTGTTCTGCTTTCGAGTTTGTAA

Upstream 100 bases:

>100_bases
CAGTTAAAATGTCAATAAGTTATTAAATATGGACGTATTTTTGACATATTGTTAAGTACTACTTAGCATAATGTCAAAAT
TCAATGAAGGAAGCATTTTT

Downstream 100 bases:

>100_bases
TATAACTATACCCAGAAAAATATGTTCAGCACAGCCAAAGGTTCAATTCCCTAGTGAGGACTTGAATCTTAGGCTGTAGG
CTAAGGGTATCAATGGTTTG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAYYTYDSLDSELISELRQDGRATISNLAKKLKVSRATVQNRLDRLIHNGAILGFTIRVHEALDKETVKAMMMIEVTGKS
TSQVIRKLRGIPQLIKLHTTNGAWDLVAEIHTTSLREFDEVLRQVREIDGILNSETSVLLSSL

Sequences:

>Translated_143_residues
MAYYTYDSLDSELISELRQDGRATISNLAKKLKVSRATVQNRLDRLIHNGAILGFTIRVHEALDKETVKAMMMIEVTGKS
TSQVIRKLRGIPQLIKLHTTNGAWDLVAEIHTTSLREFDEVLRQVREIDGILNSETSVLLSSL
>Mature_142_residues
AYYTYDSLDSELISELRQDGRATISNLAKKLKVSRATVQNRLDRLIHNGAILGFTIRVHEALDKETVKAMMMIEVTGKST
SQVIRKLRGIPQLIKLHTTNGAWDLVAEIHTTSLREFDEVLRQVREIDGILNSETSVLLSSL

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013249
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 16122; Mature: 15991

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYYTYDSLDSELISELRQDGRATISNLAKKLKVSRATVQNRLDRLIHNGAILGFTIRVH
CCEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
EALDKETVKAMMMIEVTGKSTSQVIRKLRGIPQLIKLHTTNGAWDLVAEIHTTSLREFDE
HHHHHHHHHHHHHEEECCCCHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHHHHHHHHH
VLRQVREIDGILNSETSVLLSSL
HHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
AYYTYDSLDSELISELRQDGRATISNLAKKLKVSRATVQNRLDRLIHNGAILGFTIRVH
CEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
EALDKETVKAMMMIEVTGKSTSQVIRKLRGIPQLIKLHTTNGAWDLVAEIHTTSLREFDE
HHHHHHHHHHHHHEEECCCCHHHHHHHHHCCHHHHHEECCCCHHHHHHHHHHHHHHHHHH
VLRQVREIDGILNSETSVLLSSL
HHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]