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The map label for this gene is fis [H]

Identifier: 93006474

GI number: 93006474

Start: 2033276

End: 2033632

Strand: Direct

Name: fis [H]

Synonym: Pcryo_1650

Alternate gene names: 93006474

Gene position: 2033276-2033632 (Clockwise)

Preceding gene: 93006473

Following gene: 93006475

Centisome position: 66.45

GC content: 40.06

Gene sequence:

>357_bases
ATGACACCACAGGCACAGTACAATGCCAGTCATGTTAACAAAAGCGCTGGTAATCTTGATTATTATGAAGAGGACTACCA
TCGCTCAATCCGTAATGTGGAATCTGCTTTAGATGACACAGGTCATGCGCATGAGCCATTACGGATACATGTTGAACGCG
TGGTGCGTCAATATTTTGCAATGTTAGGTGATGAGATACCAACTGACTTATATGAGCTTATTTTAAAAGAGATAGAGCAA
CCTTTGCTGTCTGTGGTACTAGAAAAAAGCCGTGGTAATCAAACCAAGTGTGCACAGATTTTAGGTCTAAATCGCGGTAC
ACTACGCAAAAAGCTCAAAATATATGGTTTAATGTAA

Upstream 100 bases:

>100_bases
GCTCATTACCTCATCTTCTTAAGATGATCGCTGCTGATTTTGATATAATAGCCAACGAGAGCCTCATGGTTTTACTCTTT
AACCCCAAGGACATTATCTT

Downstream 100 bases:

>100_bases
TACTATAAATAATGTTTTTGATACATCTGACTTATTAATAAGTACCATCAATCCTATTTATGAAACGCTTACCTACCCTA
ACTGATATTATGTATGGCAG

Product: Fis-type helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MTPQAQYNASHVNKSAGNLDYYEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQ
PLLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGLM

Sequences:

>Translated_118_residues
MTPQAQYNASHVNKSAGNLDYYEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQ
PLLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGLM
>Mature_117_residues
TPQAQYNASHVNKSAGNLDYYEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFAMLGDEIPTDLYELILKEIEQP
LLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGLM

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=96, Percent_Identity=43.75, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 13569; Mature: 13437

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQAQYNASHVNKSAGNLDYYEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFA
CCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MLGDEIPTDLYELILKEIEQPLLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGLM
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPQAQYNASHVNKSAGNLDYYEEDYHRSIRNVESALDDTGHAHEPLRIHVERVVRQYFA
CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MLGDEIPTDLYELILKEIEQPLLSVVLEKSRGNQTKCAQILGLNRGTLRKKLKIYGLM
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA