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The map label for this gene is spsC [H]

Identifier: 93005468

GI number: 93005468

Start: 754863

End: 756065

Strand: Direct

Name: spsC [H]

Synonym: Pcryo_0638

Alternate gene names: 93005468

Gene position: 754863-756065 (Clockwise)

Preceding gene: 93005467

Following gene: 93005469

Centisome position: 24.67

GC content: 46.63

Gene sequence:

>1203_bases
ATGTTAAACACCCCATTTTCACCTTGGCCAAGCTTTACTCAAATCGAGGCTGATGCGGTCAGTCGAGTATTATTATCCAA
TCAGGTAAATTATTGGACAGGGCAAGAGTGTCGTCAGTTCGAGACGGAATTCGCTGAGTGGGCTGATAGCAAGTATGCCA
TTGCGATGGGTAATGGTACTTTAGCATTAGACGTTGCCTTACAAGCGTTAGATATTGGCGCAGGCGATGAGGTCATCGTG
ACGCCGCGTACCTTTATTGCGAGTATCTCATCGGTGGTCAATATTGGCGCTACGCCAGTATTTTCCGATGTTGACGAAGC
CACTGGTAACATTACTCCTGAGTCGATCGCTGCGGTGTTGACTGACAAGACCAAAGGTATTGTATGCGTACATCTGGCAG
GCTGGCCATGTGATATGGATGGCATCATGGCGCTGGCAGATAAGCATAATCTATATGTGATAGAAGACTGCGCGCAGGCA
CATGGTGCGACCTATAAAGGTCGGAGTGTCGGTAGTATTGGTCATATCGGCGCGTGGAGCTTTTGCCAAGACAAGATCAT
GACCACAGGCGGTGAGGGCGGCATGGTCACCACCAATGACGAGCAGTTATGGCGTAAGATGTGGGCGTATAAAGACCATG
GTAAAAGCTACGCTGCTGTCTATGAGACAGATCATGCACCCGGCTATCGCTGGTTACATGAAAGCTTCGGTACAAATTGG
CGTATGACTGAAATGCAAGCAGTGCTCGGTCGTATTCAATTAAAAAGGATGCCTGATTGGACAGCCAAGCGTACCGCCAA
TGCTCAAACTATCCTAGATGCCTGTGCTAAATGGGAAGCAAAAGGCTATCTTTCTGTACCAAGATTAGAAGAATCAGTGC
AGTTTGCAGATTCGACCCACGCCTATTATAAGCTTTACGTCTATGTGCAGTCAGATAACCTACCGAAAGAGTGGTCACGA
GATCGTATTATTCGAGAGATAAATGACTTAGGGGTTCCTTGTTTTTCAGGATCGGCTTCTGAGGTATATCTGGAAAAAGC
ATTTGATAATACCGGCTTACGTCCTGAAAATAGACTGCCAGTCGCTAAGCAGCTGGGCGAAACCAGCTTGATGTTTTTGG
TACATCCAACGTTGACAGAAGACGAAATTAAGCAAACCGTACAGGCGATTGATGGCGTATTTGCGAATATACATAACCAA
TAA

Upstream 100 bases:

>100_bases
TAAAAAGTATAAATAAAACCCCAGAATCAAATATTGCGTTATAAGTTATTAATTTTCAATAATGAATCATCAGTTATAAA
TAAGCACCATCGAGGCAACT

Downstream 100 bases:

>100_bases
GATATCAGTTATTGAGTTAAGTTAAATTTAGTTACGTTAATGCAAATTGATGTTTGACCGATAGCATTTATAAACCATTG
GCATTTATAATAAACCCCTT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: TDP-D-fucosamine; 2-oxoglutarate [C]

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLNTPFSPWPSFTQIEADAVSRVLLSNQVNYWTGQECRQFETEFAEWADSKYAIAMGNGTLALDVALQALDIGAGDEVIV
TPRTFIASISSVVNIGATPVFSDVDEATGNITPESIAAVLTDKTKGIVCVHLAGWPCDMDGIMALADKHNLYVIEDCAQA
HGATYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDEQLWRKMWAYKDHGKSYAAVYETDHAPGYRWLHESFGTNW
RMTEMQAVLGRIQLKRMPDWTAKRTANAQTILDACAKWEAKGYLSVPRLEESVQFADSTHAYYKLYVYVQSDNLPKEWSR
DRIIREINDLGVPCFSGSASEVYLEKAFDNTGLRPENRLPVAKQLGETSLMFLVHPTLTEDEIKQTVQAIDGVFANIHNQ

Sequences:

>Translated_400_residues
MLNTPFSPWPSFTQIEADAVSRVLLSNQVNYWTGQECRQFETEFAEWADSKYAIAMGNGTLALDVALQALDIGAGDEVIV
TPRTFIASISSVVNIGATPVFSDVDEATGNITPESIAAVLTDKTKGIVCVHLAGWPCDMDGIMALADKHNLYVIEDCAQA
HGATYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDEQLWRKMWAYKDHGKSYAAVYETDHAPGYRWLHESFGTNW
RMTEMQAVLGRIQLKRMPDWTAKRTANAQTILDACAKWEAKGYLSVPRLEESVQFADSTHAYYKLYVYVQSDNLPKEWSR
DRIIREINDLGVPCFSGSASEVYLEKAFDNTGLRPENRLPVAKQLGETSLMFLVHPTLTEDEIKQTVQAIDGVFANIHNQ
>Mature_400_residues
MLNTPFSPWPSFTQIEADAVSRVLLSNQVNYWTGQECRQFETEFAEWADSKYAIAMGNGTLALDVALQALDIGAGDEVIV
TPRTFIASISSVVNIGATPVFSDVDEATGNITPESIAAVLTDKTKGIVCVHLAGWPCDMDGIMALADKHNLYVIEDCAQA
HGATYKGRSVGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDEQLWRKMWAYKDHGKSYAAVYETDHAPGYRWLHESFGTNW
RMTEMQAVLGRIQLKRMPDWTAKRTANAQTILDACAKWEAKGYLSVPRLEESVQFADSTHAYYKLYVYVQSDNLPKEWSR
DRIIREINDLGVPCFSGSASEVYLEKAFDNTGLRPENRLPVAKQLGETSLMFLVHPTLTEDEIKQTVQAIDGVFANIHNQ

Specific function: Involved In Eca Elongation. [C]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI2367285, Length=268, Percent_Identity=36.1940298507463, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI145693159, Length=263, Percent_Identity=35.361216730038, Blast_Score=144, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44425; Mature: 44425

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTPFSPWPSFTQIEADAVSRVLLSNQVNYWTGQECRQFETEFAEWADSKYAIAMGNGT
CCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
LALDVALQALDIGAGDEVIVTPRTFIASISSVVNIGATPVFSDVDEATGNITPESIAAVL
EEEEEEEHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHH
TDKTKGIVCVHLAGWPCDMDGIMALADKHNLYVIEDCAQAHGATYKGRSVGSIGHIGAWS
CCCCCCEEEEEECCCCCCCCHHHEEECCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDEQLWRKMWAYKDHGKSYAAVYETDHAPGYRWLHESFGTNW
HHHHHHEECCCCCCEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCC
RMTEMQAVLGRIQLKRMPDWTAKRTANAQTILDACAKWEAKGYLSVPRLEESVQFADSTH
CHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHCCCCC
AYYKLYVYVQSDNLPKEWSRDRIIREINDLGVPCFSGSASEVYLEKAFDNTGLRPENRLP
EEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEHHHCCCCCCCCCCCC
VAKQLGETSLMFLVHPTLTEDEIKQTVQAIDGVFANIHNQ
HHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNTPFSPWPSFTQIEADAVSRVLLSNQVNYWTGQECRQFETEFAEWADSKYAIAMGNGT
CCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
LALDVALQALDIGAGDEVIVTPRTFIASISSVVNIGATPVFSDVDEATGNITPESIAAVL
EEEEEEEHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHH
TDKTKGIVCVHLAGWPCDMDGIMALADKHNLYVIEDCAQAHGATYKGRSVGSIGHIGAWS
CCCCCCEEEEEECCCCCCCCHHHEEECCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDEQLWRKMWAYKDHGKSYAAVYETDHAPGYRWLHESFGTNW
HHHHHHEECCCCCCEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCC
RMTEMQAVLGRIQLKRMPDWTAKRTANAQTILDACAKWEAKGYLSVPRLEESVQFADSTH
CHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHCCCCC
AYYKLYVYVQSDNLPKEWSRDRIIREINDLGVPCFSGSASEVYLEKAFDNTGLRPENRLP
EEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEHHHCCCCCCCCCCCC
VAKQLGETSLMFLVHPTLTEDEIKQTVQAIDGVFANIHNQ
HHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]