Click here to switch to the map view.

The map label for this gene is yceD [C]

Identifier: 93005343

GI number: 93005343

Start: 608897

End: 609490

Strand: Direct

Name: yceD [C]

Synonym: Pcryo_0513

Alternate gene names: 93005343

Gene position: 608897-609490 (Clockwise)

Preceding gene: 93005340

Following gene: 93005344

Centisome position: 19.9

GC content: 40.91

Gene sequence:

>594_bases
ATGTCAAGCACCCAAGATAACAAGCCGTCAGCGCTTCATGCTAGTAAAGTACAAGTGCCTACGTCAACCAGCATGCCTGA
TAACATCTCTTTAAATAAGTGGGAAGACACTGGCTTTGAATGGGCAGGTGAAGAAGCTCCCAGCTCTTTTGAGCGTCTTG
CGACTATTTTAGCTAGCGAGCATGAACAATCAAATATTGTGCTAAATACCACTCTGTATCGTCGTAACAATGTACTGCAT
TTGGCTTTCACATTGACTGGTGAAGTCTGGCTGACTTGCCAGCGCTGTCTGCGACCGATTGCTATTGATTTGAGTGATGA
GTATGATATTGCGCTTCTTGATAATGAAAGCCAAATACGCCTAGTTAATGAAGAGCAAGATTATTTATTGTTAGACGAAA
TTGTCACTGAGCAATCGCCAGAGCGACTATTACCATTTAAAAAATTGGTAGAAGATGAGATTTTGCTCAAAACGCCAATG
GCGCCAAAACATGATGACTGTGAAATGAGTGTTGAGCAGTTTGGTAAAATACCTGAAGAAGAAGAAACCGAAAATCCTTT
TGCTGCTTTAGCATCTTTGAAAGGTAACTTATAA

Upstream 100 bases:

>100_bases
TTGCCAAAAAATATTAACATACTAGCGCTAGCGCAACAGGGCGCTTTCCGTTAGTATGGCAGGCAATATTATACACCGTT
TTTGATCAATGAGGCCGCGT

Downstream 100 bases:

>100_bases
CGCTATAAACGGCATTTATAAAAGATATATTCTATTATATTTTTGCCCGCTTTATGCAGAAGAGTGAAAAGCAGGGCTTT
ATTAATCCGTTAAACATGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSSTQDNKPSALHASKVQVPTSTSMPDNISLNKWEDTGFEWAGEEAPSSFERLATILASEHEQSNIVLNTTLYRRNNVLH
LAFTLTGEVWLTCQRCLRPIAIDLSDEYDIALLDNESQIRLVNEEQDYLLLDEIVTEQSPERLLPFKKLVEDEILLKTPM
APKHDDCEMSVEQFGKIPEEEETENPFAALASLKGNL

Sequences:

>Translated_197_residues
MSSTQDNKPSALHASKVQVPTSTSMPDNISLNKWEDTGFEWAGEEAPSSFERLATILASEHEQSNIVLNTTLYRRNNVLH
LAFTLTGEVWLTCQRCLRPIAIDLSDEYDIALLDNESQIRLVNEEQDYLLLDEIVTEQSPERLLPFKKLVEDEILLKTPM
APKHDDCEMSVEQFGKIPEEEETENPFAALASLKGNL
>Mature_196_residues
SSTQDNKPSALHASKVQVPTSTSMPDNISLNKWEDTGFEWAGEEAPSSFERLATILASEHEQSNIVLNTTLYRRNNVLHL
AFTLTGEVWLTCQRCLRPIAIDLSDEYDIALLDNESQIRLVNEEQDYLLLDEIVTEQSPERLLPFKKLVEDEILLKTPMA
PKHDDCEMSVEQFGKIPEEEETENPFAALASLKGNL

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22290; Mature: 22159

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTQDNKPSALHASKVQVPTSTSMPDNISLNKWEDTGFEWAGEEAPSSFERLATILASE
CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
HEQSNIVLNTTLYRRNNVLHLAFTLTGEVWLTCQRCLRPIAIDLSDEYDIALLDNESQIR
CCCCCEEEEEEEEECCCEEEEEEEECCHHHHHHHHHHCCEEEECCCCCCEEEECCCCEEE
LVNEEQDYLLLDEIVTEQSPERLLPFKKLVEDEILLKTPMAPKHDDCEMSVEQFGKIPEE
EECCCCCEEHHHHHHCCCCCHHCCCHHHHHCCHHEEECCCCCCCCCCCCCHHHHCCCCCC
EETENPFAALASLKGNL
CCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SSTQDNKPSALHASKVQVPTSTSMPDNISLNKWEDTGFEWAGEEAPSSFERLATILASE
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
HEQSNIVLNTTLYRRNNVLHLAFTLTGEVWLTCQRCLRPIAIDLSDEYDIALLDNESQIR
CCCCCEEEEEEEEECCCEEEEEEEECCHHHHHHHHHHCCEEEECCCCCCEEEECCCCEEE
LVNEEQDYLLLDEIVTEQSPERLLPFKKLVEDEILLKTPMAPKHDDCEMSVEQFGKIPEE
EECCCCCEEHHHHHHCCCCCHHCCCHHHHHCCHHEEECCCCCCCCCCCCCHHHHCCCCCC
EETENPFAALASLKGNL
CCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA