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The map label for this gene is secY [H]

Identifier: 93005334

GI number: 93005334

Start: 602277

End: 603608

Strand: Direct

Name: secY [H]

Synonym: Pcryo_0504

Alternate gene names: 93005334

Gene position: 602277-603608 (Clockwise)

Preceding gene: 93005333

Following gene: 93005335

Centisome position: 19.68

GC content: 43.99

Gene sequence:

>1332_bases
ATGTCATCGACTGGTATACCGCTTAATCCTTTTGCCTTTATACGTAAGTATGATGAGCTATGGACGCGTTTGTTATTCTT
AATCGGCGCATTGATTGTTTATCGTTTTGGGTCGCATATCCCAGTACCGGGTATCAATCCGGTTAACTTGGCTGATCTGT
TTTCGCGCAACGAAAATACCATTCTGAGCATGTTTAATATGTTCTCAGGTGGTGCACTAGAGCGTATGTCCATCATGGCA
CTTGGTATTATGCCATATATCTCAGCATCGATTATTGTACAGATGATGTCTGCGGTATTGCCATCGCTTGAAGCTCTCAA
AAAAGAGGGTGAAGCGGGACGACGTAAGCTAAACAAGTATACCCGTCAAGGGACACTTGCATTAGCTCTAGTACAGTCAT
TAGGGATGTGTGCTGGCTTAATCAGTCAAAACCTTACTTTATCTTCTGGTCTGACTTTCTATATTCCAGCGGTTACTTCA
CTGGTAGCTGGTGCTATGTTCTTAATGTGGCTTGGTGAGCAGATTACAGAGCGCGGCGTAGGTAATGGTATCTCAATGCT
CATTTTTGCGAGTATTGTGGCTGGTACGCCAGGTATGATTTCGCAGTCTATTGAACAGGTCAACCAAGGTCAAATGAACT
TGATTGTCCTCTTTATCTTTGCACTGTTAGGTGTCGCGGTTACTGCGGGTATCGTCTATATTGAACGTGCTCAGCGCCGT
GTTCCTGTCAATTATGCGCAAAAACAACAGCAAGGTCGCAAGATTTACGCTCAGCAGCAATCACATTTGCCGTTGAAGCT
AAATATGGCAGGGGTTATTCCTGCTATTTTTGCTAGCTCATTGCTATTGTTTCCTGCAAGTTTAGGGCAGTGGGTTGGTC
AATCGCCTGATCCTACCTTGACGCAAAAGATATTGCAAAATATGGCATTGGTGTTGTCCCCAGGACAGCCGCTGTATCTC
GTTCTATTTGGTGCAATGATTATCTTTTTCTGTTACTTCTACACGGCATTGGTATTTAGTCCGCGTGAAGTGGCTGAAAA
CCTTAAACGTAGTGGTGCGTATATCCCAGGTATTCGCCCAGGACAACAAACTCAGCGTTACCTCGATCATGTATTAAACC
GATTGACCTTTATTGGCGCGATGTATATGACGGTTATTTGTTTAATGCCAATGGTCGTGCAGTCATCGTTTGGTGTGCCG
TTTCAACTTGGTGGTACGTCGTTACTGATTATGGTGGTTGTGGTAATGGACTTCATCTCGCAGATTCAAGCGCATTTGAT
GACCCATCAATATCATGATCAGACGTTAATTCAATCGCCCACTCAACCTTAA

Upstream 100 bases:

>100_bases
GCTTATACTTTTAAAGGTATCAAAGTGACTAAAGGCGCTAAGCAAGCAATCGAAGCTGCTGGTGGTAGCATCGAGGAGTA
GTAACGTGTCAAAGCAATCA

Downstream 100 bases:

>100_bases
ATGAGCGGTACGATATCTCAAAGGAGTATGCTATGAAAGTTCAAGCATCAGTTAAAAAGATTTGTGGTAGCTGTAAAGTT
GTGCGCCGTAAAGGCCGTGT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSTGIPLNPFAFIRKYDELWTRLLFLIGALIVYRFGSHIPVPGINPVNLADLFSRNENTILSMFNMFSGGALERMSIMA
LGIMPYISASIIVQMMSAVLPSLEALKKEGEAGRRKLNKYTRQGTLALALVQSLGMCAGLISQNLTLSSGLTFYIPAVTS
LVAGAMFLMWLGEQITERGVGNGISMLIFASIVAGTPGMISQSIEQVNQGQMNLIVLFIFALLGVAVTAGIVYIERAQRR
VPVNYAQKQQQGRKIYAQQQSHLPLKLNMAGVIPAIFASSLLLFPASLGQWVGQSPDPTLTQKILQNMALVLSPGQPLYL
VLFGAMIIFFCYFYTALVFSPREVAENLKRSGAYIPGIRPGQQTQRYLDHVLNRLTFIGAMYMTVICLMPMVVQSSFGVP
FQLGGTSLLIMVVVVMDFISQIQAHLMTHQYHDQTLIQSPTQP

Sequences:

>Translated_443_residues
MSSTGIPLNPFAFIRKYDELWTRLLFLIGALIVYRFGSHIPVPGINPVNLADLFSRNENTILSMFNMFSGGALERMSIMA
LGIMPYISASIIVQMMSAVLPSLEALKKEGEAGRRKLNKYTRQGTLALALVQSLGMCAGLISQNLTLSSGLTFYIPAVTS
LVAGAMFLMWLGEQITERGVGNGISMLIFASIVAGTPGMISQSIEQVNQGQMNLIVLFIFALLGVAVTAGIVYIERAQRR
VPVNYAQKQQQGRKIYAQQQSHLPLKLNMAGVIPAIFASSLLLFPASLGQWVGQSPDPTLTQKILQNMALVLSPGQPLYL
VLFGAMIIFFCYFYTALVFSPREVAENLKRSGAYIPGIRPGQQTQRYLDHVLNRLTFIGAMYMTVICLMPMVVQSSFGVP
FQLGGTSLLIMVVVVMDFISQIQAHLMTHQYHDQTLIQSPTQP
>Mature_442_residues
SSTGIPLNPFAFIRKYDELWTRLLFLIGALIVYRFGSHIPVPGINPVNLADLFSRNENTILSMFNMFSGGALERMSIMAL
GIMPYISASIIVQMMSAVLPSLEALKKEGEAGRRKLNKYTRQGTLALALVQSLGMCAGLISQNLTLSSGLTFYIPAVTSL
VAGAMFLMWLGEQITERGVGNGISMLIFASIVAGTPGMISQSIEQVNQGQMNLIVLFIFALLGVAVTAGIVYIERAQRRV
PVNYAQKQQQGRKIYAQQQSHLPLKLNMAGVIPAIFASSLLLFPASLGQWVGQSPDPTLTQKILQNMALVLSPGQPLYLV
LFGAMIIFFCYFYTALVFSPREVAENLKRSGAYIPGIRPGQQTQRYLDHVLNRLTFIGAMYMTVICLMPMVVQSSFGVPF
QLGGTSLLIMVVVVMDFISQIQAHLMTHQYHDQTLIQSPTQP

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=419, Percent_Identity=58.472553699284, Blast_Score=463, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48686; Mature: 48554

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTGIPLNPFAFIRKYDELWTRLLFLIGALIVYRFGSHIPVPGINPVNLADLFSRNENT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCHH
ILSMFNMFSGGALERMSIMALGIMPYISASIIVQMMSAVLPSLEALKKEGEAGRRKLNKY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TRQGTLALALVQSLGMCAGLISQNLTLSSGLTFYIPAVTSLVAGAMFLMWLGEQITERGV
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISMLIFASIVAGTPGMISQSIEQVNQGQMNLIVLFIFALLGVAVTAGIVYIERAQRR
CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPVNYAQKQQQGRKIYAQQQSHLPLKLNMAGVIPAIFASSLLLFPASLGQWVGQSPDPTL
CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
TQKILQNMALVLSPGQPLYLVLFGAMIIFFCYFYTALVFSPREVAENLKRSGAYIPGIRP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
GQQTQRYLDHVLNRLTFIGAMYMTVICLMPMVVQSSFGVPFQLGGTSLLIMVVVVMDFIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH
QIQAHLMTHQYHDQTLIQSPTQP
HHHHHHHHHHHHCHHHHCCCCCC
>Mature Secondary Structure 
SSTGIPLNPFAFIRKYDELWTRLLFLIGALIVYRFGSHIPVPGINPVNLADLFSRNENT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCHH
ILSMFNMFSGGALERMSIMALGIMPYISASIIVQMMSAVLPSLEALKKEGEAGRRKLNKY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TRQGTLALALVQSLGMCAGLISQNLTLSSGLTFYIPAVTSLVAGAMFLMWLGEQITERGV
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISMLIFASIVAGTPGMISQSIEQVNQGQMNLIVLFIFALLGVAVTAGIVYIERAQRR
CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPVNYAQKQQQGRKIYAQQQSHLPLKLNMAGVIPAIFASSLLLFPASLGQWVGQSPDPTL
CCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
TQKILQNMALVLSPGQPLYLVLFGAMIIFFCYFYTALVFSPREVAENLKRSGAYIPGIRP
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
GQQTQRYLDHVLNRLTFIGAMYMTVICLMPMVVQSSFGVPFQLGGTSLLIMVVVVMDFIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH
QIQAHLMTHQYHDQTLIQSPTQP
HHHHHHHHHHHHCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]