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The map label for this gene is glcD [H]

Identifier: 93005239

GI number: 93005239

Start: 497168

End: 498610

Strand: Reverse

Name: glcD [H]

Synonym: Pcryo_0409

Alternate gene names: 93005239

Gene position: 498610-497168 (Counterclockwise)

Preceding gene: 93005241

Following gene: 93005237

Centisome position: 16.3

GC content: 45.05

Gene sequence:

>1443_bases
ATGACTTCTTTATCTAGCCAAACCCTATCTGAAACCCATGCAGCTGCTGTTCAAACCATCCTCAGCGCTCTGCTTGACGC
CCATCAGTTTGATGCCAGCCAAATTAAAACTGATAGTGAAAGTTTAGAGCATTGGGGTAAAGACTGGACCAAGCACTTTG
CACCCGCACCTGCTGCCATCGTCTTTCCAAAAACCACCGAGCAAGTGCAAGCGATTGTACTGCTTGCCAATGAGCATGAT
GTGGTATTGACGCCAAGTGGCGGTCGTACGGGATTGTCTGCGGGTGCAGTCGCTGCCAATGGTGAGATTGTGGTCAGTAT
GGATAAGATGAACCATATCGGACAATTTTATCCTGCCGATCGTATGGTTGAGATTGAATCCGGTGTGGTCACGCAGCAGT
TGCAACAGTTTGCTGAATCGAAAGACCTCTACTACCCTGTCGACTTTGCCTCAGCAGGCTCCAGTCAAATCGGTGGCAAT
ATTGGCACCAATGCTGGCGGCATCAAAGTTATCCGCTATGGCATGACCCGTCAATGGATTATGGGGCTGACAGTAGTAAC
TGGTAAAGGTGATATCTTGCAATTGAACCGCGGTATGGTCAAAAATGCTACTGGCTATGACTTACGTCAATTGTTTATCG
GTAGCGAAGGCACACTTGGCTTTGTCACTCAGGCACAAATCAAGCTTGAGCGTCAGCCGCAAGACTTAAACGTCATGGTG
CTTGGCATGGACAGTTTTAATGATGTAATGAATGTGCTATCTGCCTTTCAAGCACAGATTGATTTAACAGCCTTCGAATT
CTTTGATGATGTGGCAATTGATAAGCTGATGGCACACGGTCAAGTGCAAGAGCCATTTGAGTCGCGTACCAAATTTTATA
CGCTATTAGAGTTTGAAGCACCGTACGAGCCGATCATGGATAAAGCCATGGCGATATTTGAAGATTGCATGGAGCAAGGT
TGGGTCATCGATGGGGTGATGAGTCAAAGTCTCGCGCAAGCGGAAGAGCTATGGAAACTACGCGAATATATCTCTGAGAC
TATCTCAGTATTTACCCCGTATAAAAACGATGTCTCGGTACTTATCAGTCATGTCCCTGAGTTTATCGCTGAGATTGATC
ATATCGTCAGTAGCAACTACCCTGACTTTGAAGTCTGTTGGTTCGGTCATATCGGTGATGGTAACTTGCATCTGAATATC
TTAAAGCCTGAAAACATGAGTAAAGACGATTTCTTCAGCGAGTGTCAAGTCGTCAACAAACACGTGTTTGAAACAGTGCA
AAGATATGGCGGTTCAGTCTCTGCTGAGCATGGCGTTGGTATGACTAAAAAGCCGTATCTACATTATAGCCGCAGTGAGA
TTGAGATTGATTATTTACGCGAAGTCAAAAAGGTCTTTGATCCCAATAATATTATGAACCGTGGTAAGATTTTTGATATG
TAA

Upstream 100 bases:

>100_bases
ACACCATTAAACACGTTCAGTTATAGCCATTTGGTTATATGATAATTCCCATAATAATCCCCTCTATGCATAGCACTCAC
GTTGATACCGAGATTTGACC

Downstream 100 bases:

>100_bases
GGCGTTTTTACTCCTGATATATCTTTAATTATTAAAGATAAATAGAAAGACGCGCAATTGATAAGATTAGCGTCTTTTTT
TATGCTCAAATAACACTAGT

Product: FAD linked oxidase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTSLSSQTLSETHAAAVQTILSALLDAHQFDASQIKTDSESLEHWGKDWTKHFAPAPAAIVFPKTTEQVQAIVLLANEHD
VVLTPSGGRTGLSAGAVAANGEIVVSMDKMNHIGQFYPADRMVEIESGVVTQQLQQFAESKDLYYPVDFASAGSSQIGGN
IGTNAGGIKVIRYGMTRQWIMGLTVVTGKGDILQLNRGMVKNATGYDLRQLFIGSEGTLGFVTQAQIKLERQPQDLNVMV
LGMDSFNDVMNVLSAFQAQIDLTAFEFFDDVAIDKLMAHGQVQEPFESRTKFYTLLEFEAPYEPIMDKAMAIFEDCMEQG
WVIDGVMSQSLAQAEELWKLREYISETISVFTPYKNDVSVLISHVPEFIAEIDHIVSSNYPDFEVCWFGHIGDGNLHLNI
LKPENMSKDDFFSECQVVNKHVFETVQRYGGSVSAEHGVGMTKKPYLHYSRSEIEIDYLREVKKVFDPNNIMNRGKIFDM

Sequences:

>Translated_480_residues
MTSLSSQTLSETHAAAVQTILSALLDAHQFDASQIKTDSESLEHWGKDWTKHFAPAPAAIVFPKTTEQVQAIVLLANEHD
VVLTPSGGRTGLSAGAVAANGEIVVSMDKMNHIGQFYPADRMVEIESGVVTQQLQQFAESKDLYYPVDFASAGSSQIGGN
IGTNAGGIKVIRYGMTRQWIMGLTVVTGKGDILQLNRGMVKNATGYDLRQLFIGSEGTLGFVTQAQIKLERQPQDLNVMV
LGMDSFNDVMNVLSAFQAQIDLTAFEFFDDVAIDKLMAHGQVQEPFESRTKFYTLLEFEAPYEPIMDKAMAIFEDCMEQG
WVIDGVMSQSLAQAEELWKLREYISETISVFTPYKNDVSVLISHVPEFIAEIDHIVSSNYPDFEVCWFGHIGDGNLHLNI
LKPENMSKDDFFSECQVVNKHVFETVQRYGGSVSAEHGVGMTKKPYLHYSRSEIEIDYLREVKKVFDPNNIMNRGKIFDM
>Mature_479_residues
TSLSSQTLSETHAAAVQTILSALLDAHQFDASQIKTDSESLEHWGKDWTKHFAPAPAAIVFPKTTEQVQAIVLLANEHDV
VLTPSGGRTGLSAGAVAANGEIVVSMDKMNHIGQFYPADRMVEIESGVVTQQLQQFAESKDLYYPVDFASAGSSQIGGNI
GTNAGGIKVIRYGMTRQWIMGLTVVTGKGDILQLNRGMVKNATGYDLRQLFIGSEGTLGFVTQAQIKLERQPQDLNVMVL
GMDSFNDVMNVLSAFQAQIDLTAFEFFDDVAIDKLMAHGQVQEPFESRTKFYTLLEFEAPYEPIMDKAMAIFEDCMEQGW
VIDGVMSQSLAQAEELWKLREYISETISVFTPYKNDVSVLISHVPEFIAEIDHIVSSNYPDFEVCWFGHIGDGNLHLNIL
KPENMSKDDFFSECQVVNKHVFETVQRYGGSVSAEHGVGMTKKPYLHYSRSEIEIDYLREVKKVFDPNNIMNRGKIFDM

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=445, Percent_Identity=33.2584269662921, Blast_Score=260, Evalue=2e-69,
Organism=Homo sapiens, GI37595756, Length=459, Percent_Identity=27.0152505446623, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI37595754, Length=482, Percent_Identity=25.7261410788382, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI4501993, Length=464, Percent_Identity=24.3534482758621, Blast_Score=95, Evalue=1e-19,
Organism=Escherichia coli, GI1789351, Length=445, Percent_Identity=26.9662921348315, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1787977, Length=508, Percent_Identity=25, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI48994907, Length=491, Percent_Identity=22.6069246435845, Blast_Score=85, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534361, Length=476, Percent_Identity=30.672268907563, Blast_Score=239, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI71992373, Length=475, Percent_Identity=26.7368421052632, Blast_Score=171, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71992381, Length=475, Percent_Identity=25.8947368421053, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI71992392, Length=369, Percent_Identity=26.8292682926829, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17556096, Length=225, Percent_Identity=28.4444444444444, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320023, Length=454, Percent_Identity=34.1409691629956, Blast_Score=267, Evalue=3e-72,
Organism=Saccharomyces cerevisiae, GI6320764, Length=447, Percent_Identity=32.4384787472036, Blast_Score=254, Evalue=2e-68,
Organism=Saccharomyces cerevisiae, GI6320027, Length=448, Percent_Identity=27.4553571428571, Blast_Score=153, Evalue=7e-38,
Organism=Drosophila melanogaster, GI18921117, Length=447, Percent_Identity=32.4384787472036, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24639277, Length=447, Percent_Identity=32.4384787472036, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24639275, Length=447, Percent_Identity=32.4384787472036, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24653753, Length=202, Percent_Identity=29.2079207920792, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 53490; Mature: 53359

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSSQTLSETHAAAVQTILSALLDAHQFDASQIKTDSESLEHWGKDWTKHFAPAPAAI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
VFPKTTEQVQAIVLLANEHDVVLTPSGGRTGLSAGAVAANGEIVVSMDKMNHIGQFYPAD
EECCCHHHEEEEEEEECCCCEEEECCCCCCCCCCCEEEECCEEEEEEHHHHHCCCCCCCC
RMVEIESGVVTQQLQQFAESKDLYYPVDFASAGSSQIGGNIGTNAGGIKVIRYGMTRQWI
CEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
MGLTVVTGKGDILQLNRGMVKNATGYDLRQLFIGSEGTLGFVTQAQIKLERQPQDLNVMV
HEEEEEECCCCEEEECCCCCCCCCCCCHHHHEECCCCCEEEEEEEEEEEECCCCCCEEEE
LGMDSFNDVMNVLSAFQAQIDLTAFEFFDDVAIDKLMAHGQVQEPFESRTKFYTLLEFEA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEEECC
PYEPIMDKAMAIFEDCMEQGWVIDGVMSQSLAQAEELWKLREYISETISVFTPYKNDVSV
CHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LISHVPEFIAEIDHIVSSNYPDFEVCWFGHIGDGNLHLNILKPENMSKDDFFSECQVVNK
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHH
HVFETVQRYGGSVSAEHGVGMTKKPYLHYSRSEIEIDYLREVKKVFDPNNIMNRGKIFDM
HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHCCCCHHCCCCCCCCC
>Mature Secondary Structure 
TSLSSQTLSETHAAAVQTILSALLDAHQFDASQIKTDSESLEHWGKDWTKHFAPAPAAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEE
VFPKTTEQVQAIVLLANEHDVVLTPSGGRTGLSAGAVAANGEIVVSMDKMNHIGQFYPAD
EECCCHHHEEEEEEEECCCCEEEECCCCCCCCCCCEEEECCEEEEEEHHHHHCCCCCCCC
RMVEIESGVVTQQLQQFAESKDLYYPVDFASAGSSQIGGNIGTNAGGIKVIRYGMTRQWI
CEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
MGLTVVTGKGDILQLNRGMVKNATGYDLRQLFIGSEGTLGFVTQAQIKLERQPQDLNVMV
HEEEEEECCCCEEEECCCCCCCCCCCCHHHHEECCCCCEEEEEEEEEEEECCCCCCEEEE
LGMDSFNDVMNVLSAFQAQIDLTAFEFFDDVAIDKLMAHGQVQEPFESRTKFYTLLEFEA
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEEECC
PYEPIMDKAMAIFEDCMEQGWVIDGVMSQSLAQAEELWKLREYISETISVFTPYKNDVSV
CHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LISHVPEFIAEIDHIVSSNYPDFEVCWFGHIGDGNLHLNILKPENMSKDDFFSECQVVNK
HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHH
HVFETVQRYGGSVSAEHGVGMTKKPYLHYSRSEIEIDYLREVKKVFDPNNIMNRGKIFDM
HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]