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The map label for this gene is rnaSA3 [H]

Identifier: 93005152

GI number: 93005152

Start: 389093

End: 389854

Strand: Reverse

Name: rnaSA3 [H]

Synonym: Pcryo_0321

Alternate gene names: 93005152

Gene position: 389854-389093 (Counterclockwise)

Preceding gene: 93005153

Following gene: 93005151

Centisome position: 12.74

GC content: 43.04

Gene sequence:

>762_bases
ATGCCCATGCAAAGTGGCAAAATTAAGCATTGGAATTCTGATAAAGGCTATGGCTTTATCGATGTCGACAATCAGAGTGA
AGATGTGTTTTTTCACATAAAATCCGTGCGAATGGCGCAGCCTATCAGCAAAGGGCAACGTGTCTATTTTAATAGTGAAC
GCAATGACAAAAACCAATTGCGCGCCACCGAAGTCACATCGGATGAATTGAGTATTTTAGAGACGCCAGCGTCCAATTCA
GTGGCAAATTCAATGCATCGCAGCTCAGATAATGTTAGTCAGAAAAACAATCAAAACCACATTAGCAAAAATAATCGTAG
CAGCCAGAATAAGAAAAGCAGCTTCTCTACCCTATTCAGTTTGATTGCCATTATCGCTGTTGCGGTCTATTTCTTTGCTG
ATTTGAAATCCAGTTTTTTTGCCGATAGCGCGCCATCTATTACTCTATCGCAAAATCATATTGAATCTGCCAGTAATTCA
AATGCAGCGGCTATCACTGGTGATGCGCAAATAGATCAGACGCTTGTGCTTATCAAGCAAGGTGGACCCTTTCCTTATCC
TAACAAAGACGGAACCACTTTCTATAATCGCGAAGGCAAGTTACCGGCGCAGTCGCAAGGCTACTATCGCGAATATACTG
TACCCACACCTGCCGTTTCGCATCGCGGCGCACGGCGTATTGTCACTGGTGGTCACCCACCAACCATTTATTATTTAACC
CTTGATCATTACGACAGCTTTCAAAAACTGGAGGTGAAATAA

Upstream 100 bases:

>100_bases
CGTCAGCTTAATTGCTGGCGTTTTTTTATTATTAATAACTATATTATGTATGACATAAAGCCATTATTTTACGTGATAAA
AATCTATCGATAGGACGAGG

Downstream 100 bases:

>100_bases
CATGCCTCAAGCTATTTACTATGTAAATCAAAGCAGCATTGATCAAAACCTTGTTAAAGGTAAAAGCAGCAGAACGTTTG
CTACTATTCCTGAACAAGCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: RNase Sa3 [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPMQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQPISKGQRVYFNSERNDKNQLRATEVTSDELSILETPASNS
VANSMHRSSDNVSQKNNQNHISKNNRSSQNKKSSFSTLFSLIAIIAVAVYFFADLKSSFFADSAPSITLSQNHIESASNS
NAAAITGDAQIDQTLVLIKQGGPFPYPNKDGTTFYNREGKLPAQSQGYYREYTVPTPAVSHRGARRIVTGGHPPTIYYLT
LDHYDSFQKLEVK

Sequences:

>Translated_253_residues
MPMQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQPISKGQRVYFNSERNDKNQLRATEVTSDELSILETPASNS
VANSMHRSSDNVSQKNNQNHISKNNRSSQNKKSSFSTLFSLIAIIAVAVYFFADLKSSFFADSAPSITLSQNHIESASNS
NAAAITGDAQIDQTLVLIKQGGPFPYPNKDGTTFYNREGKLPAQSQGYYREYTVPTPAVSHRGARRIVTGGHPPTIYYLT
LDHYDSFQKLEVK
>Mature_252_residues
PMQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQPISKGQRVYFNSERNDKNQLRATEVTSDELSILETPASNSV
ANSMHRSSDNVSQKNNQNHISKNNRSSQNKKSSFSTLFSLIAIIAVAVYFFADLKSSFFADSAPSITLSQNHIESASNSN
AAAITGDAQIDQTLVLIKQGGPFPYPNKDGTTFYNREGKLPAQSQGYYREYTVPTPAVSHRGARRIVTGGHPPTIYYLTL
DHYDSFQKLEVK

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 28225; Mature: 28093

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQPISKGQRVYFNSERNDKNQL
CCCCCCCEEECCCCCCEEEEEECCCCCEEEEEEEHHHHHCCCCCCCEEEECCCCCCCHHE
RATEVTSDELSILETPASNSVANSMHRSSDNVSQKNNQNHISKNNRSSQNKKSSFSTLFS
EEEECCCCCCEEEECCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
LIAIIAVAVYFFADLKSSFFADSAPSITLSQNHIESASNSNAAAITGDAQIDQTLVLIKQ
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCEEEECCCCCCEEEEEEEC
GGPFPYPNKDGTTFYNREGKLPAQSQGYYREYTVPTPAVSHRGARRIVTGGHPPTIYYLT
CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEE
LDHYDSFQKLEVK
ECCCCCCEEEECC
>Mature Secondary Structure 
PMQSGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQPISKGQRVYFNSERNDKNQL
CCCCCCEEECCCCCCEEEEEECCCCCEEEEEEEHHHHHCCCCCCCEEEECCCCCCCHHE
RATEVTSDELSILETPASNSVANSMHRSSDNVSQKNNQNHISKNNRSSQNKKSSFSTLFS
EEEECCCCCCEEEECCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHH
LIAIIAVAVYFFADLKSSFFADSAPSITLSQNHIESASNSNAAAITGDAQIDQTLVLIKQ
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCEEEECCCCCCEEEEEEEC
GGPFPYPNKDGTTFYNREGKLPAQSQGYYREYTVPTPAVSHRGARRIVTGGHPPTIYYLT
CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEE
LDHYDSFQKLEVK
ECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1398084 [H]