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The map label for this gene is xcpS [H]

Identifier: 93005087

GI number: 93005087

Start: 302822

End: 304024

Strand: Direct

Name: xcpS [H]

Synonym: Pcryo_0256

Alternate gene names: 93005087

Gene position: 302822-304024 (Clockwise)

Preceding gene: 93005086

Following gene: 93005088

Centisome position: 9.9

GC content: 46.72

Gene sequence:

>1203_bases
ATGCCCGCTTATCATTATAAAGCGCTTGACGATCGTGGCGGCATCCAAAAAGGCTTGCTTGAAGGTGATTCTGCGCGGCA
AGTACGCCAGCAGCTGCGTGATAAACAATGGACGCCTGTCGAAGTCAACGCCGTCAATGATAGGCAAAGTCAACATAAAA
GCCGCTATAAAAAACCCTCTGCTTATGAGTTGGCACTGCTTACCCGCCAGTTATCTGTGTTACTTGCTGCTGGTATTCCG
TTAGAGGAAACCTTGGCAGCTGTCGCCAAACAATCGCCAAAAACCCATATCAAATCTTTGATACTTGCCGTGCGCTCGCA
TGTCCTAGAAGGTCTCAGTTTGGCGCGCGCTTTGCAGCAAGCGGCGAGCTTTCCCCCACTATATATCGCTACCATTGCAG
CTGGAGAAAAATCTGGTCATTTGGATTTGATCTTAAATCAGCTTGCCGATTACACGGAAAATCGCTTTGCCTTACAGAAA
AAAATACAAGGCGCTATGGTTTATCCCATCGTGCTGATGGTGATGGCAGTTGGCGTAATTATGGGGTTAATGAGCTTTGT
AGTACCAAAAATTGTCAAAGTGTTTGAGCAGTCCGAACAAGCTCTGCCTTTAATTACCCAAATTGTCCTTAGCTTATCAA
ATATTATTACCCAGTGGTGGTGGCTGATGCTGCTGGTGTTGGCAGGAACGGCATTTTTATTCTATCGCTTTGCTCAGACG
CAAGCGGGCAAGCTGGCCATAGATAGTGCTGTGCTAAGATTGCCTATACTGGCACGCTTATCGAAAGGGTTGAATGCGGC
GCGCTTTGCCAGTACGCTTGCGATATTGGTGCGCTCTGGTGTGCCATTGATTGAGGCGCTCCATATTGGCGCTGCGGTCA
CCACCAATTTGCATATTCAAAAAACCATCATTACTGCTGCGGATAGAGTAACAGAGGGTTCAAGTCTGTCGAGTCAATTA
GACAAATCGCCCTATTTTCCGCCGATGATGGTACAAATGATTAAAAGTGGTGAAAACTCGGGCGAGCTTGAAAATATGCT
TAGCCGTGCTGCCAATATGCAGGAGGCAGAAGCCACCAATTTCATTAGTACTTTATTGTCATTACTTGAGCCTTTAATGC
TGGTGCTGATGGGTGTGGTCGTCATGATTATCGTAATGGCGGTGATGCTGCCAATTGTGAATATGAATGACTTGGCTGGC
TAG

Upstream 100 bases:

>100_bases
CTACGCCGCTTCTTTAAGTCGTCTATTCTTTTAATGAGCCAACTTTTCAAATCTTGATCTATCCTCTTTTATTCTTGACC
GTCTTAGGATATCCGCTGCT

Downstream 100 bases:

>100_bases
TTTTTATTAACCTTAAATATACGCTCCTGTTAGTAATAGTTGTTTTATCACCCGCATACTTAACTGCATTTCTGTTTCCA
TATTTTCTATTTCTAAATAC

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MPAYHYKALDDRGGIQKGLLEGDSARQVRQQLRDKQWTPVEVNAVNDRQSQHKSRYKKPSAYELALLTRQLSVLLAAGIP
LEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQAASFPPLYIATIAAGEKSGHLDLILNQLADYTENRFALQK
KIQGAMVYPIVLMVMAVGVIMGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLVLAGTAFLFYRFAQT
QAGKLAIDSAVLRLPILARLSKGLNAARFASTLAILVRSGVPLIEALHIGAAVTTNLHIQKTIITAADRVTEGSSLSSQL
DKSPYFPPMMVQMIKSGENSGELENMLSRAANMQEAEATNFISTLLSLLEPLMLVLMGVVVMIIVMAVMLPIVNMNDLAG

Sequences:

>Translated_400_residues
MPAYHYKALDDRGGIQKGLLEGDSARQVRQQLRDKQWTPVEVNAVNDRQSQHKSRYKKPSAYELALLTRQLSVLLAAGIP
LEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQAASFPPLYIATIAAGEKSGHLDLILNQLADYTENRFALQK
KIQGAMVYPIVLMVMAVGVIMGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLVLAGTAFLFYRFAQT
QAGKLAIDSAVLRLPILARLSKGLNAARFASTLAILVRSGVPLIEALHIGAAVTTNLHIQKTIITAADRVTEGSSLSSQL
DKSPYFPPMMVQMIKSGENSGELENMLSRAANMQEAEATNFISTLLSLLEPLMLVLMGVVVMIIVMAVMLPIVNMNDLAG
>Mature_399_residues
PAYHYKALDDRGGIQKGLLEGDSARQVRQQLRDKQWTPVEVNAVNDRQSQHKSRYKKPSAYELALLTRQLSVLLAAGIPL
EETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQAASFPPLYIATIAAGEKSGHLDLILNQLADYTENRFALQKK
IQGAMVYPIVLMVMAVGVIMGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLVLAGTAFLFYRFAQTQ
AGKLAIDSAVLRLPILARLSKGLNAARFASTLAILVRSGVPLIEALHIGAAVTTNLHIQKTIITAADRVTEGSSLSSQLD
KSPYFPPMMVQMIKSGENSGELENMLSRAANMQEAEATNFISTLLSLLEPLMLVLMGVVVMIIVMAVMLPIVNMNDLAG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=396, Percent_Identity=35.3535353535354, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1786295, Length=404, Percent_Identity=25, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43745; Mature: 43614

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYHYKALDDRGGIQKGLLEGDSARQVRQQLRDKQWTPVEVNAVNDRQSQHKSRYKKPS
CCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCC
AYELALLTRQLSVLLAAGIPLEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASFPPLYIATIAAGEKSGHLDLILNQLADYTENRFALQKKIQGAMVYPIVLMVMAVGVI
HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLVLAGTAFLFYRFAQT
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QAGKLAIDSAVLRLPILARLSKGLNAARFASTLAILVRSGVPLIEALHIGAAVTTNLHIQ
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
KTIITAADRVTEGSSLSSQLDKSPYFPPMMVQMIKSGENSGELENMLSRAANMQEAEATN
HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHH
FISTLLSLLEPLMLVLMGVVVMIIVMAVMLPIVNMNDLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
PAYHYKALDDRGGIQKGLLEGDSARQVRQQLRDKQWTPVEVNAVNDRQSQHKSRYKKPS
CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCC
AYELALLTRQLSVLLAAGIPLEETLAAVAKQSPKTHIKSLILAVRSHVLEGLSLARALQQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASFPPLYIATIAAGEKSGHLDLILNQLADYTENRFALQKKIQGAMVYPIVLMVMAVGVI
HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGLMSFVVPKIVKVFEQSEQALPLITQIVLSLSNIITQWWWLMLLVLAGTAFLFYRFAQT
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QAGKLAIDSAVLRLPILARLSKGLNAARFASTLAILVRSGVPLIEALHIGAAVTTNLHIQ
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
KTIITAADRVTEGSSLSSQLDKSPYFPPMMVQMIKSGENSGELENMLSRAANMQEAEATN
HHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHH
FISTLLSLLEPLMLVLMGVVVMIIVMAVMLPIVNMNDLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1588814; 10984043 [H]