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The map label for this gene is yjgF [C]

Identifier: 93005081

GI number: 93005081

Start: 294834

End: 295355

Strand: Reverse

Name: yjgF [C]

Synonym: Pcryo_0250

Alternate gene names: 93005081

Gene position: 295355-294834 (Counterclockwise)

Preceding gene: 93005082

Following gene: 93005079

Centisome position: 9.65

GC content: 41.57

Gene sequence:

>522_bases
ATGTCCAAAATGATTTCCAAAGCTATTTCTAAAACAGCGCTTACTAATTTATCCAAGGCTTTTCTTATCAGTATCTGTGC
ATTAGGATTTACCGTTAGTGCCACTGCTGCGCCCGAAAAAACTTCAACTCATACACATCATGGAGCAACTATCACTAAGT
CTAGCCCTGTGTTTTTAGGTGACGGCGGCAATTATCCTTTCTCAGAAGCAGTCCGTGTCGGCGATACTTTGTATATGTCT
GGTCAGATTGGCTTTAAAGATGGCAAGCTGGTCAAAGGCGGTGTTAAAGCCGAAGCCAAACAGACAATGGATAATATCAA
TACTACGTTATTGAAATATGGTTACCAAAAGTCAGATATCGTTAAGTGTATGGTGATGCTCACCGATATGGACGATTTTA
ATGACTTCAATAAAATCTATAAGGCTGAACTGGCAAAGCCTTATCCCGTCCGTTCAGCTTTTGGCGTAGCTGAATTGGCG
GCAGGTGCCAGCGTTGAAGTTGAATGTATCGCTGTCAAATAA

Upstream 100 bases:

>100_bases
ATATTAAGAATACGTAAAGTAGTGCGCTATCCATGTTCAAGCATTTTTATAGCGCACTTCGTATAGCAGTGATTTATAAA
CTTATAATAAGGAGACAATG

Downstream 100 bases:

>100_bases
AAATGTCTCTTAAAATATTACTCTAAACAATCAAAGCGTCCTCAAGTAGGGCGCTTTCTTTGGTCACGCGTAGCACTTCT
TCTAATGTCGTACGTCCCGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSKMISKAISKTALTNLSKAFLISICALGFTVSATAAPEKTSTHTHHGATITKSSPVFLGDGGNYPFSEAVRVGDTLYMS
GQIGFKDGKLVKGGVKAEAKQTMDNINTTLLKYGYQKSDIVKCMVMLTDMDDFNDFNKIYKAELAKPYPVRSAFGVAELA
AGASVEVECIAVK

Sequences:

>Translated_173_residues
MSKMISKAISKTALTNLSKAFLISICALGFTVSATAAPEKTSTHTHHGATITKSSPVFLGDGGNYPFSEAVRVGDTLYMS
GQIGFKDGKLVKGGVKAEAKQTMDNINTTLLKYGYQKSDIVKCMVMLTDMDDFNDFNKIYKAELAKPYPVRSAFGVAELA
AGASVEVECIAVK
>Mature_172_residues
SKMISKAISKTALTNLSKAFLISICALGFTVSATAAPEKTSTHTHHGATITKSSPVFLGDGGNYPFSEAVRVGDTLYMSG
QIGFKDGKLVKGGVKAEAKQTMDNINTTLLKYGYQKSDIVKCMVMLTDMDDFNDFNKIYKAELAKPYPVRSAFGVAELAA
GASVEVECIAVK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=110, Percent_Identity=42.7272727272727, Blast_Score=97, Evalue=7e-21,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=33.8582677165354, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=30.7086614173228, Blast_Score=65, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=109, Percent_Identity=38.5321100917431, Blast_Score=83, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI25148896, Length=109, Percent_Identity=38.5321100917431, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71982068, Length=109, Percent_Identity=38.5321100917431, Blast_Score=83, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322138, Length=108, Percent_Identity=35.1851851851852, Blast_Score=75, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19921376, Length=109, Percent_Identity=38.5321100917431, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 18490; Mature: 18358

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMISKAISKTALTNLSKAFLISICALGFTVSATAAPEKTSTHTHHGATITKSSPVFLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEECCCCEEEE
DGGNYPFSEAVRVGDTLYMSGQIGFKDGKLVKGGVKAEAKQTMDNINTTLLKYGYQKSDI
CCCCCCHHHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHH
VKCMVMLTDMDDFNDFNKIYKAELAKPYPVRSAFGVAELAAGASVEVECIAVK
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
SKMISKAISKTALTNLSKAFLISICALGFTVSATAAPEKTSTHTHHGATITKSSPVFLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEECCCCEEEE
DGGNYPFSEAVRVGDTLYMSGQIGFKDGKLVKGGVKAEAKQTMDNINTTLLKYGYQKSDI
CCCCCCHHHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHH
VKCMVMLTDMDDFNDFNKIYKAELAKPYPVRSAFGVAELAAGASVEVECIAVK
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]