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The map label for this gene is lptF [H]

Identifier: 93004884

GI number: 93004884

Start: 62445

End: 63731

Strand: Direct

Name: lptF [H]

Synonym: Pcryo_0053

Alternate gene names: 93004884

Gene position: 62445-63731 (Clockwise)

Preceding gene: 93004879

Following gene: 93004885

Centisome position: 2.04

GC content: 46.39

Gene sequence:

>1287_bases
ATGACCCAACAAGTTGCCTCAACGACCGCATTAGTCTTGGGGTTTTTAGTGGTGATGATGCTTGGCGGACGTTTGATACG
CTATTTTGGTATCGCAGCTGAAGGTAATTTAGACATCGGTTTGCTGTTTACCATCATTGGTTATAACCTACCGTATTTCT
TAGAGCTTATCCTGCCATTGGCGTTCTTTATTGCCCTAATGCTGGTATTTGGGCGCCTATATGTTGACCAAGAAATGGCA
GTGATTAATGCCAGTGGCGTGTCGCGCGGTCGGCTTGGGCGCTTGATGACGCCATTGATTTTGGCATTGTTCGTTGGTGA
GGCAGCATTATCCATCGTTGGTAAGCCATGGGGCGTGCGTTCATCTGAGAATGTCTGGCAACAGCAAGCGTTGACCAGTG
CCTTTGACTTAATTCGCCCCAATCAGTTTATCAGCAGTGGCAATTATCATCTGTATGTGGGCAGTTTGAGTGATGATAAA
AAACAATTACAAGATGTGATATTGATTCAGTCTGAGCCTGAAAAAAAGGGCAGTGGGGCTAAAAATAATACTGCTAAAAA
TAGTGCCATGGATCTTGAAAATAACATCGATGTCGAAACTACCGAACAGCTTAATATTCCAGAATTGCCCACAGCGCTTG
CCAATAATAATATTAGCAAAGACACGATTACGCTTGCCAAACGTGCTGAACAAGTAGATACGGGCAATAGTGGCGTAACC
CAATTGGATTTGTTCCAAGGTCGCCGTTATGAAGTCGGGGCTGGTAGCTTGAAATACAATCAAGTAGGTTTTGATCGCTA
TCGTATTACCTTGACGGAGTCGTCTAAAGAAGTCATCACTGAAGACAATATCGAGACGCAAGCGATTGGACCGTTATGGC
AAGCGGCAACAGGCAATGCGCAAGTGGGCAGTAATAATGCCATGCGTGCGGCCCAAGGCGAGCTTGGTTATCGTTTATCG
TTACCATGGCTGATGATTATTGCGCCGATGCTCGCCGTACCACTAGCGCAAGTTCGTCCACGTCAAGGTCGTTGGTTACG
CCTATTTCCCTCTATTTTACTGTTTGTCAGCTGCGCGCTCGGTATCATCTCGCTCAAAAATGCTGTCGGTAAAGGCAGTG
TAAGCGTGTGGGCCTATGCATGGCTCATCTTAGGGTTTATGGCATTGGCACTGTATATGAATTGGGGTAGCCGCGTGCAG
CACCGATTGCGCTTTCGCAAGCCAGAGAATGAGCTTTTGACGGTTACCGACAATCAAAATAGTAGCTCACAAGGAGGACA
ATCCTAA

Upstream 100 bases:

>100_bases
GGTCAAGCTTAACTGTCCTTATCAATACAGTCGCGATGAACCGCATGAACGCCAACTTCTACAACCGCTAAGAGTGCCTA
CTGTGATATTACGCCGCTAT

Downstream 100 bases:

>100_bases
TGAGTGCTCTATTCTCTAAATCATCGAAGCCGAATTCGCCAAATGCTAAATCGCTACTTAGCCCAAAACCGACTAACCTC
AAAGTGCTTAGCCGCTATGT

Product: permease YjgP/YjgQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQEMA
VINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDK
KQLQDVILIQSEPEKKGSGAKNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVT
QLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVGSNNAMRAAQGELGYRLS
LPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCALGIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQ
HRLRFRKPENELLTVTDNQNSSSQGGQS

Sequences:

>Translated_428_residues
MTQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQEMA
VINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDK
KQLQDVILIQSEPEKKGSGAKNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVT
QLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVGSNNAMRAAQGELGYRLS
LPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCALGIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQ
HRLRFRKPENELLTVTDNQNSSSQGGQS
>Mature_427_residues
TQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQEMAV
INASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDKK
QLQDVILIQSEPEKKGSGAKNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVTQ
LDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNAQVGSNNAMRAAQGELGYRLSL
PWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCALGIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQH
RLRFRKPENELLTVTDNQNSSSQGGQS

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=387, Percent_Identity=25.5813953488372, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 47037; Mature: 46906

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPL
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCEECCCCCCHHHHHHHHHCCHHHHHHHHHHH
AFFIALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVR
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSENVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSGA
CCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCHHHHHHHEEEEECCCCCCCCCC
KNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCE
QLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNA
EEEHHCCCCEECCCCCEEECCCCCEEEEEEEECCCCHHHCCCCCCHHHCCCHHHCCCCCC
QVGSNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCAL
CCCCCCCCCHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQHRLRFRKPENELLTVTDNQN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
SSSQGGQS
CCCCCCCC
>Mature Secondary Structure 
TQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPL
CCHHHHHHHHHHHHHHHHHHCCHHHHHHCEECCCCCCHHHHHHHHHCCHHHHHHHHHHH
AFFIALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVR
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSENVWQQQALTSAFDLIRPNQFISSGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSGA
CCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCHHHHHHHEEEEECCCCCCCCCC
KNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGVT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCE
QLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGNA
EEEHHCCCCEECCCCCEEECCCCCEEEEEEEECCCCHHHCCCCCCHHHCCCHHHCCCCCC
QVGSNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLAQVRPRQGRWLRLFPSILLFVSCAL
CCCCCCCCCHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQHRLRFRKPENELLTVTDNQN
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
SSSQGGQS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]