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The map label for this gene is ytfM [H]

Identifier: 92113986

GI number: 92113986

Start: 2116924

End: 2118759

Strand: Direct

Name: ytfM [H]

Synonym: Csal_1863

Alternate gene names: 92113986

Gene position: 2116924-2118759 (Clockwise)

Preceding gene: 92113985

Following gene: 92113987

Centisome position: 57.27

GC content: 64.81

Gene sequence:

>1836_bases
ATGAGAACGCTGCGTCACTCAGCCGTGCAGCGCCTCCTCTGCGGGGTGGCCTTGAGCGTCGTCACGTCCAGTGCCATGGC
CCTGGAGGCGTCGGTCGAAGGCCTCGACGGCCCGGCTGCCACAAACGTCGTCAACTTCCTCGAGCCGCTCGATACCCGGA
ACATCAGTGAGGCGCGTCTCGACAGCGATATCCGTGAGCGTACGCAACGAGCGTTGCGCGCATTCGGCTATTATTCGCCC
CAGATCGAGACCTCCTATCCCGACGGCATGTTCGCTGGCGACGTGGTGATCGCCATCGATCCCGGGCCCCGTACCCATAT
CACGCAACTCGATCTGGGCGTCGACGGCGCTGCCGGCGACGATCCCGCCTTCCGGAAGGCCCTCGCGAGCATACCGCTCG
AGGAAGGCGACCCGCTTCGCCACGACCGTTACGACAGCGCCAAGACCCGGCTTTCCACACTGGCGCTGGAACGGGGCTAT
TTCGATGCGGGATTCGCGCAACAACGCATGGAAGTGCGCCCCTGGGAGGCGAGCGCACGCCTGTTTCTGCGCATGCGCAG
CGGTCCTCGCTACCGTTTCGGCGATATTCGTTTCGCGGGCAGTCAAATCGAAGAAGCCCGTCTGCGGCGCATGCTGCCTT
TCACCAAGGGCGATCCCTATCTGGCGGGGCAACTGGCCGAATACAACCAGCGTCTGGGACAGACCAACTGGTTTCGCGGC
ATCGCCGTTCGCCCGCGCATCGGCGACGAGCGCAACGTCACGCGGGGCGGGCAATGGTGGCAAGAGGCCACGGGGCGCAC
GCCGCCCCTGAGCAGCGGCGCGGGGCTGGCCGCCGTGCGCCGTCTGCATGGCCTGCAAAGCACCGACGTGCCGGTGGATG
TGGATCTCGTCCCCGCAGACCGGCACAAGTTCGAAACCGGCATCGGCTATGCCACCGATGTCGGGCCACGGGTGCAATTC
AGCTGGGAAATGCCCTGGCTCAACGACCGCGGTCACAGCCTGTCCAATTCGCTTTATCTCTCGGGACCGGAACAACGCTT
CGATGGCGAGTACGTGATGCCTCTGGCGAATCCCCTGCGCGACAGTTATCGCCTCAGTTATGGGCTGCGCAGTCTCGATA
ACGAGGATACCCAGAGTCTGGAAAGCTCGGTGGAGCTTGCCCGGCGCTGGGAGTTCGACAACGACTGGGTACAAGAACTC
TACTTCCGAACCACCTACGAGGACTTCACCCAGGCGGATCAGGACGAGCAGGTGCTCCTGCTGTATCCCGGCATCAGCTG
GACCCGCACGCGCACGCGGCAACCCAACTTCCCCAGGTGGGGGGATCGCCAGCGCCTGGCGCTGGAAGTCTCCGATCCCG
CCTGGGGCTCGGACGCACGCTTTCTGCGCGCCAGGTTCGACTCGCAATGGATTCGTACGCTGGGCTCGGACAATCGCTTC
GTCGGCCGCATCGGCGGTGGCGCCACGGCGACCGACACCTTCGACAAGATTCCCCCCTCGCTGCGCTTCTTCGCCGGTGG
CGATCAGAGCGTGCGCGGCTACAGCTACGAAAGCCTGTCTCCGGAAAACGATGACGGCGAACTGCTCGGCGGCCAGCACA
TGCTGACCGCCAGTGCCGAGTATCAGCGCCGAGTCACCGGCAACTGGTGGGGAGCCACCTTCGTCGATACCGGCAACGCC
TTCAACGCCTGGTGGCCCGAGGAACTCAAGACCGGGGCCGGGGTGGGGGTTCGCTGGATCTCGCCCGTGGGTCCGGTGCG
GTTCGATATCGCCCATCCGTTCGACAATGAGGAGGATGCGTGGCGTCTGCACTTCGCCATCGGGCCGGAATTCTGA

Upstream 100 bases:

>100_bases
GCATGACAAGGACCGAGTCATTGAATATCCATCATGGTTTTCCTGCAGGGCACGGCCTCGGCCGGCCCTCGATCGTTCTC
GGCGCGTCCCCCCAGGCGTT

Downstream 100 bases:

>100_bases
TCCGCGCGCTGATCTACGTGCCCCTCTGGCTGCTGGGGCTGGTATTGCTGTTGCTCGGGACGGCGCTGTCGCCCTGGGGG
ACCGCGTGGCTGGCCGATCA

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MRTLRHSAVQRLLCGVALSVVTSSAMALEASVEGLDGPAATNVVNFLEPLDTRNISEARLDSDIRERTQRALRAFGYYSP
QIETSYPDGMFAGDVVIAIDPGPRTHITQLDLGVDGAAGDDPAFRKALASIPLEEGDPLRHDRYDSAKTRLSTLALERGY
FDAGFAQQRMEVRPWEASARLFLRMRSGPRYRFGDIRFAGSQIEEARLRRMLPFTKGDPYLAGQLAEYNQRLGQTNWFRG
IAVRPRIGDERNVTRGGQWWQEATGRTPPLSSGAGLAAVRRLHGLQSTDVPVDVDLVPADRHKFETGIGYATDVGPRVQF
SWEMPWLNDRGHSLSNSLYLSGPEQRFDGEYVMPLANPLRDSYRLSYGLRSLDNEDTQSLESSVELARRWEFDNDWVQEL
YFRTTYEDFTQADQDEQVLLLYPGISWTRTRTRQPNFPRWGDRQRLALEVSDPAWGSDARFLRARFDSQWIRTLGSDNRF
VGRIGGGATATDTFDKIPPSLRFFAGGDQSVRGYSYESLSPENDDGELLGGQHMLTASAEYQRRVTGNWWGATFVDTGNA
FNAWWPEELKTGAGVGVRWISPVGPVRFDIAHPFDNEEDAWRLHFAIGPEF

Sequences:

>Translated_611_residues
MRTLRHSAVQRLLCGVALSVVTSSAMALEASVEGLDGPAATNVVNFLEPLDTRNISEARLDSDIRERTQRALRAFGYYSP
QIETSYPDGMFAGDVVIAIDPGPRTHITQLDLGVDGAAGDDPAFRKALASIPLEEGDPLRHDRYDSAKTRLSTLALERGY
FDAGFAQQRMEVRPWEASARLFLRMRSGPRYRFGDIRFAGSQIEEARLRRMLPFTKGDPYLAGQLAEYNQRLGQTNWFRG
IAVRPRIGDERNVTRGGQWWQEATGRTPPLSSGAGLAAVRRLHGLQSTDVPVDVDLVPADRHKFETGIGYATDVGPRVQF
SWEMPWLNDRGHSLSNSLYLSGPEQRFDGEYVMPLANPLRDSYRLSYGLRSLDNEDTQSLESSVELARRWEFDNDWVQEL
YFRTTYEDFTQADQDEQVLLLYPGISWTRTRTRQPNFPRWGDRQRLALEVSDPAWGSDARFLRARFDSQWIRTLGSDNRF
VGRIGGGATATDTFDKIPPSLRFFAGGDQSVRGYSYESLSPENDDGELLGGQHMLTASAEYQRRVTGNWWGATFVDTGNA
FNAWWPEELKTGAGVGVRWISPVGPVRFDIAHPFDNEEDAWRLHFAIGPEF
>Mature_611_residues
MRTLRHSAVQRLLCGVALSVVTSSAMALEASVEGLDGPAATNVVNFLEPLDTRNISEARLDSDIRERTQRALRAFGYYSP
QIETSYPDGMFAGDVVIAIDPGPRTHITQLDLGVDGAAGDDPAFRKALASIPLEEGDPLRHDRYDSAKTRLSTLALERGY
FDAGFAQQRMEVRPWEASARLFLRMRSGPRYRFGDIRFAGSQIEEARLRRMLPFTKGDPYLAGQLAEYNQRLGQTNWFRG
IAVRPRIGDERNVTRGGQWWQEATGRTPPLSSGAGLAAVRRLHGLQSTDVPVDVDLVPADRHKFETGIGYATDVGPRVQF
SWEMPWLNDRGHSLSNSLYLSGPEQRFDGEYVMPLANPLRDSYRLSYGLRSLDNEDTQSLESSVELARRWEFDNDWVQEL
YFRTTYEDFTQADQDEQVLLLYPGISWTRTRTRQPNFPRWGDRQRLALEVSDPAWGSDARFLRARFDSQWIRTLGSDNRF
VGRIGGGATATDTFDKIPPSLRFFAGGDQSVRGYSYESLSPENDDGELLGGQHMLTASAEYQRRVTGNWWGATFVDTGNA
FNAWWPEELKTGAGVGVRWISPVGPVRFDIAHPFDNEEDAWRLHFAIGPEF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=612, Percent_Identity=37.4183006535948, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 68868; Mature: 68868

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLRHSAVQRLLCGVALSVVTSSAMALEASVEGLDGPAATNVVNFLEPLDTRNISEARL
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
DSDIRERTQRALRAFGYYSPQIETSYPDGMFAGDVVIAIDPGPRTHITQLDLGVDGAAGD
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCCCCC
DPAFRKALASIPLEEGDPLRHDRYDSAKTRLSTLALERGYFDAGFAQQRMEVRPWEASAR
CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEE
LFLRMRSGPRYRFGDIRFAGSQIEEARLRRMLPFTKGDPYLAGQLAEYNQRLGQTNWFRG
EEEEECCCCCEEECCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
IAVRPRIGDERNVTRGGQWWQEATGRTPPLSSGAGLAAVRRLHGLQSTDVPVDVDLVPAD
EEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCC
RHKFETGIGYATDVGPRVQFSWEMPWLNDRGHSLSNSLYLSGPEQRFDGEYVMPLANPLR
CHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCHHHCCCCEEECCCHHHH
DSYRLSYGLRSLDNEDTQSLESSVELARRWEFDNDWVQELYFRTTYEDFTQADQDEQVLL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEE
LYPGISWTRTRTRQPNFPRWGDRQRLALEVSDPAWGSDARFLRARFDSQWIRTLGSDNRF
EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
VGRIGGGATATDTFDKIPPSLRFFAGGDQSVRGYSYESLSPENDDGELLGGQHMLTASAE
EEECCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCHH
YQRRVTGNWWGATFVDTGNAFNAWWPEELKTGAGVGVRWISPVGPVRFDIAHPFDNEEDA
HHHHCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCC
WRLHFAIGPEF
EEEEEEECCCC
>Mature Secondary Structure
MRTLRHSAVQRLLCGVALSVVTSSAMALEASVEGLDGPAATNVVNFLEPLDTRNISEARL
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
DSDIRERTQRALRAFGYYSPQIETSYPDGMFAGDVVIAIDPGPRTHITQLDLGVDGAAGD
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCCCCC
DPAFRKALASIPLEEGDPLRHDRYDSAKTRLSTLALERGYFDAGFAQQRMEVRPWEASAR
CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEE
LFLRMRSGPRYRFGDIRFAGSQIEEARLRRMLPFTKGDPYLAGQLAEYNQRLGQTNWFRG
EEEEECCCCCEEECCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
IAVRPRIGDERNVTRGGQWWQEATGRTPPLSSGAGLAAVRRLHGLQSTDVPVDVDLVPAD
EEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCC
RHKFETGIGYATDVGPRVQFSWEMPWLNDRGHSLSNSLYLSGPEQRFDGEYVMPLANPLR
CHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCHHHCCCCEEECCCHHHH
DSYRLSYGLRSLDNEDTQSLESSVELARRWEFDNDWVQELYFRTTYEDFTQADQDEQVLL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEE
LYPGISWTRTRTRQPNFPRWGDRQRLALEVSDPAWGSDARFLRARFDSQWIRTLGSDNRF
EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
VGRIGGGATATDTFDKIPPSLRFFAGGDQSVRGYSYESLSPENDDGELLGGQHMLTASAE
EEECCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCHH
YQRRVTGNWWGATFVDTGNAFNAWWPEELKTGAGVGVRWISPVGPVRFDIAHPFDNEEDA
HHHHCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCC
WRLHFAIGPEF
EEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]