Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
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Accession | NC_007963 |
Length | 3,696,649 |
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The map label for this gene is ruvB
Identifier: 92113971
GI number: 92113971
Start: 2103961
End: 2105013
Strand: Direct
Name: ruvB
Synonym: Csal_1848
Alternate gene names: 92113971
Gene position: 2103961-2105013 (Clockwise)
Preceding gene: 92113970
Following gene: 92113972
Centisome position: 56.92
GC content: 66.86
Gene sequence:
>1053_bases ATGATCGACACCGACCGTTTGATCGCGGCGCAACCTCAAGGCAGCGAGGTGCACGTGGATCATGCCATTCGTCCGCGTCG TCTTGCCGAGTACATCGGCCAGCCCCGCGTCCGCGAGCAGCTGGATATCTTCATCAGCGCCGCGCGCAAGCGGGGCGACA GCCTCGACCACACCCTCGTCTTCGGCCCGCCCGGCCTGGGCAAGACCACGCTGGCCAATATCATCGCCGCCGAGATGGAT GTCGATATCAAGTCGACCTCCGGCCCCGTGCTCGAACGCGCGGGCGACCTGGCCGCCATGCTGACCAACCTCCAGGCCGG CGACGTCCTGTTCATCGACGAGATCCATCGTCTGCCCGCTTCCGTCGAGGAAGTGCTTTACCCGGCGATGGAGGACTACC AGCTCGATATCATGATCGGGGAGGGGCCCGCGGCGCGCTCCATCAAGCTGGACCTGCCGGCCTTCACGCTGGTCGGCGCC ACGACACGCGCCGGCTTGCTCACGTCGCCGCTGCGCGACCGCTTCGGTATCGTCCAGCGCCTCGAGTTCTACGCCGTCGA GGAACTCACCGAGATCGTCGTGCGCTCGGCTCACTTGCTGGGCGTCGACGCCGAGCGCGACGGTGCCGCCGAAATCGCCC GGCGCGCGCGGGGCACGCCGCGTATCGCCAATCGCCTGTTGCGTCGTGTGCGTGACTTCGCCGAAGTGCGTGGCGATGGC CGGCTGACCGCGGCCATCGCCGACCAGGCGCTCAACATGCTGCACGTCGATCGCCACGGGCTCGATCACATGGATCGGCG CCTGCTGATGGCGATGATCGAGAAATTCGACGGTGGCCCCGTGGGGGTCGACAGTCTCGCCGCGGCCATCAGCGAGGAAC GCGACACGATCGAGGATGTCCTAGAGCCGTACTTGATCCAGCAGGGCTTCATGATGCGAACGGCGCGCGGGCGTGTGGTC ACTCGCTCGGCCTATGAACATTTCGGCTTGACGCCGACCGACGCCGTCGCGACGGCCGTTCCCCTCACGCCCCCCGGAGA AAGCGACGCATGA
Upstream 100 bases:
>100_bases CGAAGCCTCGCGCATGCTGTCCGGGCTCGATGACGGCCTCTCGACAGAGGGCCTGATCAAAGCTGCGCTGGCCCGCAAGC TGGCTGGCTAAGGACCGCGA
Downstream 100 bases:
>100_bases GCGACTTCACGCATACGGTAAAGGTGTACATCGAAGACACCGATGCCGGGGGCATCGTCTATTACGTCAATTATCTCAAA TACATGGAGCGGGCACGCAG
Product: Holliday junction DNA helicase RuvB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLVFGPPGLGKTTLANIIAAEMD VDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPASVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGA TTRAGLLTSPLRDRFGIVQRLEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTARGRVV TRSAYEHFGLTPTDAVATAVPLTPPGESDA
Sequences:
>Translated_350_residues MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLVFGPPGLGKTTLANIIAAEMD VDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPASVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGA TTRAGLLTSPLRDRFGIVQRLEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTARGRVV TRSAYEHFGLTPTDAVATAVPLTPPGESDA >Mature_350_residues MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLVFGPPGLGKTTLANIIAAEMD VDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPASVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGA TTRAGLLTSPLRDRFGIVQRLEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDVLEPYLIQQGFMMRTARGRVV TRSAYEHFGLTPTDAVATAVPLTPPGESDA
Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday
COG id: COG2255
COG function: function code L; Holliday junction resolvasome, helicase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ruvB family
Homologues:
Organism=Escherichia coli, GI1788167, Length=334, Percent_Identity=71.8562874251497, Blast_Score=483, Evalue=1e-138,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RUVB_CHRSD (Q1QWF8)
Other databases:
- EMBL: CP000285 - RefSeq: YP_573899.1 - ProteinModelPortal: Q1QWF8 - SMR: Q1QWF8 - STRING: Q1QWF8 - GeneID: 4028074 - GenomeReviews: CP000285_GR - KEGG: csa:Csal_1848 - NMPDR: fig|290398.4.peg.1748 - eggNOG: COG2255 - HOGENOM: HBG339960 - OMA: EKFDGGP - ProtClustDB: PRK00080 - BioCyc: CSAL290398:CSAL_1848-MONOMER - HAMAP: MF_00016 - InterPro: IPR003593 - InterPro: IPR004605 - InterPro: IPR008823 - InterPro: IPR008824 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.10.10 - ProDom: PD005323 - SMART: SM00382 - TIGRFAMs: TIGR00635
Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N
EC number: =3.6.4.12
Molecular weight: Translated: 38308; Mature: 38308
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLV CCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEE FGPPGLGKTTLANIIAAEMDVDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPA ECCCCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCH SVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGATTRAGLLTSPLRDRFGIVQR HHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCEEEECCHHHCCHHHHHHHHHHHHHHH LEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDV CEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LEPYLIQQGFMMRTARGRVVTRSAYEHFGLTPTDAVATAVPLTPPGESDA HHHHHHHCCHHHHHCCCCEEEHHHHHHCCCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure MIDTDRLIAAQPQGSEVHVDHAIRPRRLAEYIGQPRVREQLDIFISAARKRGDSLDHTLV CCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEE FGPPGLGKTTLANIIAAEMDVDIKSTSGPVLERAGDLAAMLTNLQAGDVLFIDEIHRLPA ECCCCCCHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCH SVEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLVGATTRAGLLTSPLRDRFGIVQR HHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCEEEECCHHHCCHHHHHHHHHHHHHHH LEFYAVEELTEIVVRSAHLLGVDAERDGAAEIARRARGTPRIANRLLRRVRDFAEVRGDG HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC RLTAAIADQALNMLHVDRHGLDHMDRRLLMAMIEKFDGGPVGVDSLAAAISEERDTIEDV CEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH LEPYLIQQGFMMRTARGRVVTRSAYEHFGLTPTDAVATAVPLTPPGESDA HHHHHHHCCHHHHHCCCCEEEHHHHHHCCCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA