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The map label for this gene is ydcN [C]

Identifier: 92112332

GI number: 92112332

Start: 218114

End: 218686

Strand: Direct

Name: ydcN [C]

Synonym: Csal_0197

Alternate gene names: 92112332

Gene position: 218114-218686 (Clockwise)

Preceding gene: 92112330

Following gene: 92112335

Centisome position: 5.9

GC content: 66.49

Gene sequence:

>573_bases
ATGGGCAATATAGTGCACAAGTCTAGCGAGCGTCCCGATGTCCTGGTGCACGTTGCCGCCAACGTGAGGCGCCTGCGCCA
GGGGGCGTCGCTGAGCCAGCAGGCGCTGGCCGAGCGGGCCGGCGTGAGTCGGCGCATGCTGGTCAATATCGAAAAGGGCG
ACGTCAACGTCAGCCTGAGCACGCTGGATCGACTCGCCGAGGCGCTGGGGGTACTGTTCTACGCCCTGGTTCAGCCGCCG
GGCAGCGAGGACTCGGCGCGCATCGACGAAGTCGCCTGGGTGGGGCGCTTCCCCGACAGTCACGCCCGGCTGCTGGCGAG
CAAGCCGGCTCGACAGGAGGTCGAGTTGTGGTCCTGGTCGATGGAGCCTGGAGAGAGTTACGAGTCCGTCGCCGACGGCA
CCGGCTGGCACGAGATGCTGGTGGTGATCGAGGGCACGCTGACCCTGGAGCTCGCGGACCACGAGGTGACGATCGAGGCC
GGTGACTTTCACGTCTACCCCAGCGACCAGTTCCACCGTTACCGCAACGAGGGTACGGGGCGTCTGCGCTTCATCCGCAA
CGTGGTGCACTGA

Upstream 100 bases:

>100_bases
GCGACTGACATGACACCTCCTTGCTTCTGCGGCATGCTGCTCGTCTGACAGCGCCAGTGGCTGGCCGCACGCGGTATTCA
AGAGAATTGCGATTGTACGG

Downstream 100 bases:

>100_bases
CGCCAAGGCTCCATTCAAGCACCGATCCAGGTGCCAATGGCGATCTGCGTGGCCTCGTGACTGGCTGATGGCAGGCGCGC
GTGCCCGCTTACCCGGCGTC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulatory Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator Protein; Y4mF Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Regulator With Helix-Turn-Helix Motif; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain Protein; Hth-Type Transcriptional Regulator

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MGNIVHKSSERPDVLVHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALVQPP
GSEDSARIDEVAWVGRFPDSHARLLASKPARQEVELWSWSMEPGESYESVADGTGWHEMLVVIEGTLTLELADHEVTIEA
GDFHVYPSDQFHRYRNEGTGRLRFIRNVVH

Sequences:

>Translated_190_residues
MGNIVHKSSERPDVLVHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALVQPP
GSEDSARIDEVAWVGRFPDSHARLLASKPARQEVELWSWSMEPGESYESVADGTGWHEMLVVIEGTLTLELADHEVTIEA
GDFHVYPSDQFHRYRNEGTGRLRFIRNVVH
>Mature_189_residues
GNIVHKSSERPDVLVHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALVQPPG
SEDSARIDEVAWVGRFPDSHARLLASKPARQEVELWSWSMEPGESYESVADGTGWHEMLVVIEGTLTLELADHEVTIEAG
DFHVYPSDQFHRYRNEGTGRLRFIRNVVH

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=170, Percent_Identity=30, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21210; Mature: 21079

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNIVHKSSERPDVLVHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLS
CCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCEEEEHH
TLDRLAEALGVLFYALVQPPGSEDSARIDEVAWVGRFPDSHARLLASKPARQEVELWSWS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEECCCCCHHHHHHHCCCCCCCHHEEEEC
MEPGESYESVADGTGWHEMLVVIEGTLTLELADHEVTIEAGDFHVYPSDQFHRYRNEGTG
CCCCCCHHHHHCCCCCEEEEEEEECEEEEEEECCEEEEECCCEEECCCHHHHHHHCCCCH
RLRFIRNVVH
HHHHHHHHCC
>Mature Secondary Structure 
GNIVHKSSERPDVLVHVAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLS
CCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCEEEEHH
TLDRLAEALGVLFYALVQPPGSEDSARIDEVAWVGRFPDSHARLLASKPARQEVELWSWS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEECCCCCHHHHHHHCCCCCCCHHEEEEC
MEPGESYESVADGTGWHEMLVVIEGTLTLELADHEVTIEAGDFHVYPSDQFHRYRNEGTG
CCCCCCHHHHHCCCCCEEEEEEEECEEEEEEECCEEEEECCCEEECCCHHHHHHHCCCCH
RLRFIRNVVH
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA